Maylandia zebra (zebra mbuna): 101481912
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Entry
101481912 CDS
T02814
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101481912 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mze03400
]
101481912 (msh3)
DNA repair and recombination proteins [BR:
mze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101481912 (msh3)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
MACPF
Motif
Other DBs
NCBI-GeneID:
101481912
NCBI-ProteinID:
XP_014269932
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Position
LG12:complement(23663573..23725725)
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AA seq
1115 aa
AA seq
DB search
MPKSLKKSCTTQTSISRYFGGLSSSSSSFASNKQRGINPNPAEQQLSRGNQKLSSDDELE
LPRKRVKPSPKDHQAEDVECEPASCQGIKDTKLTLSRKAGSLCSSTLEKLKGFTCGAEPR
VVSSITREETETADAGQESSDWSPRCATGQPETTHRLQHAEREHEGEEEDDKGKVDLGLA
AAKQGVHFSQFAKTGGGKCAELGPPLDCSTSSRRSKSIFTPLEQQVIQLKQQHKDALLAV
ECGYKYRFFGEDAEIAAKELNIVCHLDHNFMTCSIPTHRLFVHVRRLVSHGHKVGVVKQT
ETSAIKASGANRNTLFTRQLSALYTKSTLVGEDVNPVCRLGDVEEGGCDDVVSDPPDSFL
LCISENWDKLKKQLTVGLVAVQPSTGDVLLDCFPDGPSRSELECRVLKINPVEILVPSDL
SEQTERLLHSITNASAQADDRVRVERRDSAEFEFASAMNTVTSFYCHIQAKGSRSLSSVA
SLESPVISCLGPLIQYLQEFNLERVLRSESSFRRLTCESEIMTLSAGTLRNLEILNNQTD
GSVKGSLLWVLDHTRTPFGRRIMRKWVSQPLTDLQSISERQDAVQEILESDSLTLNSIRS
LLSRLPDLERGICSIYHKKSSTQEFYLISSSLSRLGLELQTLLPAMRSQISSGLLRSLLL
DTPDQLIPAQSFLKVLNEKAAKSGNKTELFSDLSGFPVLQERMEQIQTVLREIQDHRKDI
RLILKAPALEYTTVSGQEFLIEVKNSVSSIVPPEWVKISSTKAVSRYHSPFLVDRYKKLQ
QLREQLMLDCQREWTNFLDQFGEHYHTMKRAISHLATMDCLFSLAEVAKQGDYCRPEVCD
NKHQITIRDGRHPAIDLLMGEHNQYVPNHTELQGDGRRTMIITGPNMGGKSSYIRQVALI
CVMAQMGSYVPASAACVGILDGIYTRMGASDNIYKGRSTFMEELTEASDIISRATKQSLV
ILDELGRGTSTHDGIAIAYATLEYFIKDVKALTLFVTHYPPLCELERVYPEHVSNYHMAF
LLNEPDISADTDDGEVQPEFITFLYQLTEGAAGRSYGLNVARLADIPDPILLTAAHKARE
LEKVVDARRKNKKLLSDLWRISDRSSLMKWLQLNS
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagtctctgaaaaagtcctgcaccactcagacctccatcagcaggtacttcgga
ggactgagcagcagcagcagcagctttgcctccaacaagcagcgcgggattaacccaaat
cctgcagagcagcaactttcaagaggcaaccagaagctttcatctgatgatgaattggaa
ttgccaagaaaacgagttaagccttctccaaaggaccaccaggcggaggatgtggagtgt
gagcctgcgtcctgtcagggcattaaagacacaaagctgacgctgagccgaaaagcaggc
agcctgtgctcctccacgttggagaagctgaaaggcttcacctgcggggctgagcccagg
gtcgtcagcagcatcacccgggaagaaacagagacggctgatgcaggtcaggaaagcagt
gattggtctcctcgttgtgctacaggtcaacctgaaactacacacagactgcagcatgca
gaaagggagcatgaaggtgaagaggaggatgataaaggaaaggtagatctggggttggct
gctgcaaaacagggagttcacttctctcagtttgccaagacaggaggaggaaagtgtgca
gagctgggtcctccattggactgtagtacctcctccaggcgttcaaagagcattttcacc
ccccttgaacagcaggtgatccagctgaaacagcagcataaggatgctttgttggctgtg
gagtgtggttacaagtacaggttctttggagaggatgcagagattgctgcaaaggagctg
aacatcgtctgtcatctggatcataacttcatgacgtgcagcatccccacacaccgcctg
tttgttcatgtcagacggctggtgtctcacggacacaaggtcggagtagttaaacagaca
gaaacatctgcgatcaaagcgtcaggggccaacagaaatactctgttcactcgtcagctc
agcgccctgtacaccaagtccactttggtgggagaggatgtaaatccggtctgcagactc
ggggatgtggaggaggggggctgtgatgatgttgtgtcggaccctcccgacagtttcctg
ctttgtattagtgagaattgggacaaactgaagaagcagctcactgtaggccttgtggca
gttcagcccagcaccggcgacgtgcttctggactgttttcctgacggtccctctcgctct
gagctggaatgccgtgtccttaaaatcaaccctgtcgaaatcctggtgccctccgacctc
tcagagcaaaccgagagactcctgcacagcattacgaatgcaagcgctcaggctgacgac
agagtcagagtagagaggagggacagcgctgagtttgagtttgcctcggcaatgaacaca
gtcacctcgttctactgtcacatccaggcgaaaggctctcgctctctgtcgagcgtcgcg
tccctggagagcccagtgatcagctgtctggggccgctcatccagtaccttcaagaattc
aacttggagcgagttcttagaagtgaaagctccttccggcgtctgacctgcgagtcggag
attatgactctgagcgctggcactctccgaaatctagaaatactcaacaatcagacagat
ggtagtgtgaaaggaagtctgctgtgggtgttggaccacactcgcactccgtttggaagg
agaataatgaggaagtgggtgagccagccccttacagacctgcagtctatatccgagagg
caggatgcggtgcaggaaatcctggagtcggactcgctgactctaaattccattcgatcc
ctgctgtcacgtctgccagacttggagcgaggcatctgcagcatatatcacaaaaagtct
tctactcaggaattttacctcattagtagcagtctttctcgcctggggctggaactgcag
actttgctaccagccatgcgttcccagatcagctcagggctacttcgaagccttctgttg
gacactccagaccagctgattccagcccaaagcttcctaaaggtgctcaatgaaaaggca
gccaagtcagggaacaagacggagctattctcagatctgtctggattcccagtgctgcag
gaaagaatggagcaaatccaaactgtcctccgtgagattcaagaccaccgcaaagacatc
cgtctgatactaaaggcccccgcgctcgaatatacgactgtttctggacaggagtttctg
attgaggtgaagaactcagtttcatccattgttccacctgaatgggtcaaaatcagcagc
accaaggcagtcagcaggtatcactctcctttcctggtggaccgctacaagaagctgcag
cagctccgagagcagctgatgctggattgccagagggagtggaccaattttctggatcag
tttggggagcactaccacaccatgaaaagggctattagtcacctagcaaccatggactgt
ctcttttcattggctgaggtggctaaacaaggggactattgcaggccagaggtgtgtgac
aataagcaccagattacgatcagggatggcaggcatcctgctattgatttactgatggga
gagcacaaccagtatgtgcccaaccacactgaactacagggtgatggcaggagaacaatg
ataatcactgggcctaatatggggggtaagagctcctacattcgccaggtagctcttatt
tgtgtaatggctcagatgggctcatacgtcccagcctcagcggcctgtgtgggcatcctg
gatggcatttacaccaggatgggagcttcagacaacatctacaaaggccgtagtacattc
atggaagagctgacagaggcctcagacataatttcccgtgcgaccaagcagtcattggtc
atccttgatgaattgggacggggcacaagcacccatgatggaattgccatcgcctatgcc
accctggaatatttcatcaaagatgtgaaagccctaaccctgtttgtaacccattatcct
cctctgtgtgagctggagcgggtgtatcctgaacatgtgtctaactaccacatggctttc
ttgctcaatgaacctgatatctctgctgacactgatgatggagaagttcagccagagttc
attaccttcttataccagttaactgaaggagctgcagggcggagctatggtctgaacgtt
gcccgactggctgacatcccagatcctatactgctcactgctgctcacaaagccagagag
ctggagaaagtggtcgacgctagaagaaagaataagaaacttctctcagacctttggagg
atctccgacagatcgtccctcatgaaatggctgcagttaaactcttga
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