Maylandia zebra (zebra mbuna): 101482524
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Entry
101482524 CDS
T02814
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101482524 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101482524 (xab2)
03041 Spliceosome [BR:
mze03041
]
101482524 (xab2)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101482524 (xab2)
Spliceosome [BR:
mze03041
]
Complex B
Other components
Prp19-related factors
101482524 (xab2)
Complex C
101482524 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
Suf
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
Tcf25
TPR_1
Motif
Other DBs
NCBI-GeneID:
101482524
NCBI-ProteinID:
XP_004552159
UniProt:
A0A3P9CRK3
LinkDB
All DBs
Position
LG4:19194050..19201271
Genome browser
AA seq
849 aa
AA seq
DB search
MKTLNGKTDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPGYEEVNNCHERALVFMHKMPRIWMDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRDLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTIDPMKATGKPHSLWVFFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHLMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRVTANFWQTWKDFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEEDEDQGPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattaaacggaaaaaccgatgtcatatttgaggacgacgatctaccttatgaa
gaggagatcatcaggaatccatattcagtcaagtgctggatgcgttacatcgaattcaaa
cagaatggaccaaaatctaccctcaatatgatatatgagcgggctctaaaagaactccct
ggcagctataagttgtggtacaattatctgagagagaggcgaaaacaagtcaaagggaaa
tgtatcacagaaccaggctatgaagaagtcaataactgtcatgaaagggcactagtgttc
atgcacaagatgcctagaatatggatggattactgtcagttccttgtgtctcaatgcaag
atcacaagaagtcgtagaacatttgaccgagcacttagagctcttcctgtaactcagcac
ccacgcatctggcctctgtatctccgctttgtccgtgacttgccgttgcctgagacagcc
atccgagtgtaccgcaggtaccttaagctttctccagaaaatgcagaggaatacatagac
tacttgcggtctgttggccgcctcgatgaagcagctgtgcggctagcagctgttgtcaat
gatgaaaactttgtgtccaaagagggaaagtctaactatcaactgtggcatgaactatgt
gacctgatctcccagaatcctgacaaggtgacctctctgaatgtaggagccatcattcga
ggaggcctcactcgcttcacagatcaacttggaaaactttggtgctccttagctgactat
tacatcaggagtggccactttgagaaagcacgtgatgtctatgaagaggccatccttaca
gtagtcactgtaagggatttcacacaagtatttgacagttatgctcaatttgaggagagc
atgatcgctgctaagatggaaactacagctgagatggggcaggatgaggatgatgacata
gacctggagctaagacttgcccgctttgagcagctcattgcccggcgacccctcttgttg
aacagtgtactcctgagacagaacccccataatgttcatgagtggcacaagcgggtaaaa
ctgtatgacggaaatccacgacagatcatcaacacatacactgaggcagtccagactatt
gatccaatgaaggccacagggaaacctcactcgctctgggttttctttgctaaattctat
gaggaaaatgagcagctggatgatgcgaggacgatctttgagaaggctaccaaggtgaac
tacaaacaggtggatgacctcgctgcagtgtggtgtgaatatggagagatggaacttcgt
catgagaattacgaacaggcactacgaattctgaggaaagcaacagctatcccatccaag
aaagcagagtactttgatgcttctgagcctgtccaaaacagagtctacaagtctttgaag
gtctggtcaatgctggcagacttggaggaaagtcttggcactttccagtctacgaaagca
gtttatgaccggattattgatctccggattgccactccacagatcatcatcaattacgcc
atgttccttgaagagcacaactactttgaggaaagctttaaagcatatgaacgtggtatc
gctcttttcaagtggccaaatgtttacgacatctggaacacttacctcaccaagtttatt
gatcgatatgggggcaagaagttggaaagagccagagatttatttgaacaggcattggat
ggctgcccagccaaatttgctaagactatttatctactgtatgccaagttggaggaggag
tatggattggcgcgacacgctatggctgtatatgaaagagcaacacaggcagtagaaact
gaggagagacatctcatgtttaacatctacatcaagagagcagctgaaatttatggagtt
acatataccagagcaatctaccagaaggctattgaggtccttcctgatgagcatgcaaga
gacatgtgtctacggtttgctgacatggagagtaaacttggtgagattgatcgtggtaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacggctaatttctggcaa
acctggaaagattttgagatccgccatggaaatgaggacacgattagagagatgttgagg
atcaaacgaagtgtccaggctacatacaacacacaggtcaactttatgtcctctcagatg
ctgaaggccacaacaagctccacaggcactgtgtcagatcttgctccaggccagatggga
attgatgatatgaagatgttggaacagaaagcacaacagcttgctgcagaggctgaacag
gacaagcctaaacccaaagagaagattctctttgtcaggagtgacacttctcgcagtgag
ctggcagaacttgccaaacaagccaatcctgatgaaatagacatcgatgatgatgaggat
gaagaagatgaagaccaaggaccggatgaggtgcagcttgaacagaagagcgtccctaca
gctgtttttggagggcttaaagatgactag
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