KEGG   Maylandia zebra (zebra mbuna): 101484098
Entry
101484098         CDS       T02814                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
mze  Maylandia zebra (zebra mbuna)
Pathway
mze03030  DNA replication
mze03410  Base excision repair
mze03420  Nucleotide excision repair
mze03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mze00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101484098 (rfc5)
   03410 Base excision repair
    101484098 (rfc5)
   03420 Nucleotide excision repair
    101484098 (rfc5)
   03430 Mismatch repair
    101484098 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mze03032]
    101484098 (rfc5)
   03036 Chromosome and associated proteins [BR:mze03036]
    101484098 (rfc5)
   03400 DNA repair and recombination proteins [BR:mze03400]
    101484098 (rfc5)
DNA replication proteins [BR:mze03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101484098 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    101484098 (rfc5)
Chromosome and associated proteins [BR:mze03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101484098 (rfc5)
DNA repair and recombination proteins [BR:mze03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101484098 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    101484098 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_lid_RFC1 AAA_11 AAA_22 RuvB_N AAA_assoc_2 ResIII DEAD AAA_14 AAA_24 DUF815 nSTAND_NTPase5 ATPase_2 AAA_7 PhoH AAA_16 AAA_30 AAA_5 AAA_19 DNAX_ATPase_lid TIP49 AAA_2 Thioredoxin_6 Glyco_hydro_57
Other DBs
NCBI-GeneID: 101484098
NCBI-ProteinID: XP_004566745
UniProt: A0A3P9D320
LinkDB
Position
LG12:32526436..32531823
AA seq 335 aa
MASTSKAPLQTRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGK
TSTILASARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVIQQENIDITPDGMKAIVTLSTGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSD
IANILDWCLNKDFTSAYNQILELKTLKGLALHDILTEVHLLVHRVDFPPAIRISLLIKLA
DVEHRLASGTSEKIQLSSMVAAFQAVRELVVSEAP
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcttctacaagtaaagcgccgttacagaccagaaatttaccatgggttgaaaaatac
agaccacagacacttgatgatctgatttcacacaaagatattctgagcactatccaaaag
tttatcagtgaggacaagcttccacaccttttgttctatggcccacctggaacaggaaaa
acctcaaccatactcgcttctgccaggcagctgtacaaagagaaggagttcaactctatg
gtgttggagctcaatgcatctgatgacagaggtattgatgtagtacgaggtcccattctg
agttttgccagcaccaggaccatcttcaagaagggcttcaagttggtgatactggacgag
gccgatgccatgacccaggatgcccagaatgcattgcgtcgagtcattgagaagttcaca
gaaaacactcgattctgtctcatttgcaactacctttccaagatcatccccgccctgcaa
tctcgctgcaccaggttccgctttggtccgctttcgccagaccagatgatccctcggttg
gagcacgttatccagcaggagaatattgacatcacgccagatggaatgaaggctattgtg
accttatcaacaggtgacatgagaagatcgctcaacatactgcagagcaccagtatggcc
tatgggaaggtcacagaagacacagtgtacacctgcacagggcaccccctccgctcagat
atagccaacatcctcgactggtgcctcaacaaagactttacttcagcgtacaaccaaatc
cttgagctgaagactctgaaaggtttggctttgcatgatattctcactgaggttcatctg
cttgtacacagagtggattttcctcccgctattcggattagtctgctcatcaagttggcc
gacgtagaacatcggcttgcatcgggaaccagcgagaagatccagctgagctccatggtt
gcagctttccaggcagtgagagagctcgtggtcagcgaagcaccttag

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