Maylandia zebra (zebra mbuna): 101486445
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Entry
101486445 CDS
T02814
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101486445
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mze00536
]
101486445
Glycosaminoglycan binding proteins [BR:
mze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101486445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
101486445
NCBI-ProteinID:
XP_024654544
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All DBs
Position
LG23:complement(23310592..23347461)
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AA seq
1790 aa
AA seq
DB search
MGPSLHSRIIVCLALTLVQVIAVTCQEDTKNDSCTENGKVYRNYETWSPELCRVCVCDSG
AVVCEDEVCEELSGCQMAVTPKGECCPVCSTHTTEPKADTCTENGTTYSNNQIWSPEPCR
VCVCDTGTVVCEEVVCEELGDCETTVAPQGECCPVCSAATQQPPNTDNKTDSCTADGKLY
SNNQIWSPEPCRVCLCEMGTVVCEDMVCEDIGDCQTAEIPEGECCPVCSVTQTDTCTENG
KVYADNDMWSPEPCRVCVCNKGTAMCEDVVCEDLGDCQKTVTPEGECCPVCLTAASTLIP
STDPATAADEKKEENCKVNGEVYHHNDIWKPEPCRVCVCDNGVTVCDEIQCEVLSNCEKA
VTPAGECCPVCDNFASASRMIEIMGLKGQKGEPGDIPYVVGIPGPSGPSGPPGAQGSPGP
RGFKGRRGFPGPPGFDGEPGIPGNPGEPGPPGHPSHPGGNLVTQMASGFSEKSGPSAMLT
GSRGEAGPRGLPGPSGPPGPAGGQGIPGEAGDPGLMGEPGHRGPDGPPGKPGLDGQPGPA
GATGEPGYPGSAGARGFPGLPGNPGLRGHKGHSGLVGPRGKAGAAGVKGASGTPGAMGAP
GPVGPPGMQGERGRTGTTGSVGKRGTPGHVGKPGPLGPIGIPGIPGFPGNPGMKGEAGPT
GVRGSPGQQGPRGDVGRVGPPGPIGQQGASGQDGALGPRGSAGIAGLQGPPGMVGPPGPP
GPQGSTGALGAKGQLGDVGAPGFKGEAGLKGERGDHGAPGPLGPMGEDGKRGPRGDAGSI
GPPGSPGETGPPGNRGFPGADGLPGPKGAQGERGLPGSSGAKGLSGDPGRNGESGLTGAR
GLTGLIGAQGAEGKQGPVGSAGDDGKQGPAGSTGNRGPAGPMGLPGPKGFLGDAGKAGEA
GSPGAPGQRGPNGKDGERGAAGPPGPAGPAGKRGEQGSQGVFGFQGLPGTPGPPGESGKP
GDKGLAGEIGEVGATGPRGERGSPGERGETGPNGLQGPKGSPGAPGPDGLKGSHGPKGAA
GEPGGPGLQGIPGERGIPGSSGPKGDAGATGEKGPEGKAGADGARGLPGPIGPAGSSGPN
GVKGETGPSGPTGRRGTRGIAGSTGEPGPTGAAGFPGPPGPDGQPGVKGETGETGLKGEA
GSPGPQGVAGKPGEQGPVGVTGLKGGRGTKGPTGSPGFPGLPGGVGPPGPLGAVGADGPI
GAPGKQGPPGIRGENGGQGRQGEHGPPGPPGGSGEKGESGEDGPPGPDGPPGPAGAAGQR
GIVGQPGVRGERGLLGLPGPAGQPGKAGAPGPQGSTGPPGGIGLPGATGPRGDPGPEGIV
GAEGPPGKDGLVGERGDRGNPGPEGLAGGPGSPGTEGPVGITGSPGQMGVNGERGPPGPQ
GQPGIRGKVGPQGPQGDKGAAGEPGERGQKGHRGFTGLQGLQGTEGATGDAGAIGVVGPS
GPRGPPGVVGPPGKEGNIGHPGAMGPPGSRGSSGDIGAQGPPGEPGPPGPPGSPGPPTSL
SEDLFAGLVDYEAQGIPEAVEFIEDAVAAEPPLLPEFNKDEALPNKNSATLRADTGIHAT
LKSLSGNLQNFRSPDGSKRNPAKTCQDIKNCYPQKSSGQYWIDPNQGSVKDAIRVFCNME
TGETCISANPPNIPRKAWWSKSRPNDNKPIWFEADMNGGTRFRYGNKEEQPNAVAVQLKL
LQLLSKESHQNVTYHCRNSVAYNDENSGDLKKALVLRAFNGQELRAQGSNRLRYTVIEDG
CSKSNGAWGRTVIEYRTQTSTRLPIMDLAPMDIGQADQEFGLDIGPVCFS
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atgggcccctcgttgcactctaggattatcgtctgcctggccctcaccttggttcaggtg
atcgccgtgacctgccaagaagatactaagaatgacagctgtacagaaaatggaaaagtc
taccgcaactatgagacatggagcccagagctgtgtcgggtctgtgtgtgcgactcgggg
gctgtagtgtgtgaggacgaggtgtgtgaggagctgagtggctgccagatggcggtgact
ccaaagggcgagtgttgccccgtgtgctcaactcacacgacagaacctaaagcagatacc
tgcacagaaaatggcacgacctactccaacaatcagatatggagcccagagccgtgtcga
gtctgtgtgtgtgacacagggactgtggtgtgtgaggaggtggtgtgtgaagagctaggc
gactgtgagaccactgtggcgcctcagggcgagtgctgccctgtgtgctcagcagccacg
caacagcctccgaacacggacaataaaactgattcctgtacagcggatggcaaactctac
tccaacaatcagatatggagcccagagccgtgtcgagtctgtttgtgtgaaatggggacg
gtggtttgtgaggacatggtgtgtgaggatataggtgactgccagaccgcagagatccca
gagggcgagtgctgtcctgtgtgctcagtcactcaaactgacacctgcacagaaaatgga
aaagtctatgctgacaatgacatgtggagcccagagccatgtcgggtgtgtgtgtgcaat
aaggggaccgccatgtgtgaagatgtggtttgcgaggacctcggtgactgccaaaaaacg
gtgaccccagagggcgagtgttgccctgtgtgcttgactgcagcttcaacattgattccc
agtacagaccccgcaacagctgcagatgagaagaaggaggaaaactgcaaagtcaatggg
gaggtctaccatcacaatgacatctggaaacccgaaccttgtcgcgtgtgcgtctgtgac
aacggcgtcactgtctgtgatgagatacagtgcgaggtcctgtcaaactgtgagaaggct
gtcacgcccgcgggagagtgctgccctgtgtgcgacaacttcgcaagtgccagcaggatg
atagaaattatgggcctcaaggggcaaaagggtgaaccaggagacatcccatatgtggtg
gggattcctggaccttcaggaccctcgggtcctccaggggctcagggaagccctggacca
agaggctttaaaggcagacggggtttcccagggcctccaggatttgatggtgagcccggt
ataccaggaaatccaggagaaccgggaccacctgggcatccctcgcaccctgggggtaac
ctggtgacacagatggcttcgggttttagcgagaagtcgggtccatctgcaatgctaaca
ggatccaggggtgaagcaggaccacgaggacttccaggaccgtctggaccaccaggtcct
gctggtggtcaaggaattcctggagaagctggagatccaggactgatgggggagccgggt
catcgaggacctgatggaccaccaggaaaacctggacttgatggacaacccggacctgca
ggagcaaccggagaaccaggatacccaggatcagcgggtgcaagaggattcccaggactt
ccaggtaatccaggactgagagggcacaaaggacacagtggacttgttggaccaagaggc
aaggctggagcagctggagtgaagggtgcttctggtactcctggtgcaatgggagctcct
ggtccagtgggaccacctgggatgcagggagaaagaggccgaaccggaacgaccggctct
gtgggtaaacgtggcacacccggccatgttggtaaaccaggtcctctggggccaatagga
atccctggtataccaggatttcccggtaaccctggaatgaagggtgaagcgggaccgaca
ggggtcagaggaagtccgggacagcaggggccaaggggcgacgttgggcgtgtcgggcca
cctggacccatcggacagcagggcgcgtcaggacaggatggagctctgggtccccgcggc
tcagcgggtatagccggtctccagggtccacctggtatggttggtccccctggccccccc
ggcccccagggttcaacaggagctcttggggcaaaaggccaactgggtgatgttggagct
cctggattcaagggagaggctggattgaagggagagcggggtgaccatggtgcaccaggt
ccgttagggcccatgggagaagatggaaagcgtggaccccgaggcgatgctggatccatc
gggcctccaggatccccaggagagacaggaccaccaggaaataggggtttccctggtgct
gacggtttaccaggcccaaagggagcccagggcgagagagggctgccaggatcttcaggc
gccaaaggtttatctggagatccaggacgcaacggagagtcgggcttgacaggagctcgg
ggtctcacaggtctcataggtgcccagggagcagaggggaagcaaggaccggtgggatcc
gctggagacgacggcaaacaaggcccagctggttcaactggaaacagaggcccagctggg
ccgatgggcctgccgggaccaaagggcttcctaggtgatgctgggaaggctggagaagct
ggaagtccaggagctccaggtcaaaggggaccaaatggaaaagatggagagagaggcgcc
gccggcccacctggcccagctggtcctgcagggaagagaggagagcagggatctcaggga
gtgtttggcttccagggtttgcccggaacaccaggcccacccggagagtcaggaaagcca
ggtgacaagggtcttgcaggagagattggggaagttggcgctacaggaccaagaggagag
agaggttctccaggagaaagaggtgaaactgggcccaatgggctgcagggacccaaaggt
agtccaggtgcacccggaccagatgggctaaagggtagccatggacccaagggtgctgct
ggagagccaggaggtccaggacttcaggggatcccaggagaaagaggcatacccggatct
tcaggcccgaagggagatgctggcgctactggagaaaaaggaccagaaggaaaggcgggg
gctgatggagcgagggggcttcctggtcccattggacctgctggttccagtggaccaaac
ggagtgaagggtgaaaccggcccatccggaccaacagggcgcagaggaacaagaggaatc
gctggatctaccggtgagcctggtccaactggtgctgctggcttccctggacctcctggt
cctgatggtcagcctggggtcaaaggtgaaacaggtgagacaggtctgaagggagaagca
ggatcacctggacctcagggcgtggctggaaaaccaggagaacagggacctgttggtgtg
accgggctgaaaggtggcagaggaacaaagggtccaacgggctcccccggttttcctgga
ttgcctggaggagttggtccacctggtcctcttggtgcagttggagcagacgggcctata
ggtgctccaggaaagcagggtcctcccgggattcgaggagagaacggaggtcagggacgt
caaggcgagcatggacctccagggccacccggcggatctggagagaaaggagaatctgga
gaggacggtcctcctggtcctgatgggcctccaggacctgctggcgctgcagggcagcga
ggaattgtcggccaacccggagtcaggggagagagaggcttgctgggactgccaggtcct
gctggtcaaccgggaaaagcaggagcacctggacctcagggaagcactggtcctcctggg
ggtatcggtttaccaggagccactgggccaagaggagatcctggacccgagggtattgtt
ggagctgaggggcctcctggtaaggacggcctagtcggagaaaggggtgacaggggcaat
cctggcccagagggtctggctggtggtccagggtctccaggtactgagggtccagtggga
ataacaggcagtccaggtcaaatgggtgtaaatggtgaaagaggccctcctggaccccaa
ggacagccaggaatacggggaaaagttggccctcaaggaccacagggggacaaaggggct
gctggagagcctggggagaggggtcagaaaggtcacagaggattcaccgggctccaaggc
ctgcaaggaacagaaggtgccacaggagacgcaggagctataggagtcgttggaccaagc
ggtccgagggggcctcctggagtggtcggtcctccaggtaaggaaggaaacattggccac
cctggagcgatgggtcctcctggaagcagagggagcagcggagatatcggagcacagggc
ccacctggtgaaccaggcccccctggccctccaggatccccaggacctcccacctcactt
tctgaagacctttttgctggcctggtcgattacgaagcacaaggaattcctgaagccgtg
gaattcattgaggacgctgtggccgccgaacctcctctgcttcccgagttcaacaaagat
gaagcccttcccaacaagaactcggccacactgcgggcagacaccggcatccacgccacg
ctgaagagcctcagtggaaatctgcagaacttccgcagtcctgacggcagcaagaggaac
cctgccaaaacctgccaggacatcaagaactgctacccacagaaaagcagcggtcagtac
tggattgatccaaaccaaggaagcgtaaaagatgccatcagggtcttctgcaatatggag
actggtgaaacctgcatctctgccaacccacccaacattccccgcaaagcctggtggtcg
aaatcaaggcccaatgacaacaaacccatctggttcgaggctgacatgaacggtggcacc
aggttccgctacggcaacaaggaggaacaaccaaacgcggtggccgtgcagctgaagttg
ctacagcttttgtccaaagagtcgcaccagaacgtcacctaccactgcaggaacagcgtt
gcttacaacgacgagaacagtggggatctgaagaaagcactggtcctcagagccttcaat
ggtcaagaactgagagcccaaggctccaaccggctacgatatactgtcattgaggacggc
tgctcgaaatcaaatggcgcatggggtcggacggtgattgagtacaggactcaaacttca
accaggctgcctatcatggacttggcccccatggacatcggacaagctgatcaggagttt
ggcctggacatcggccctgtgtgcttctcataa
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integrated database retrieval system
