Maylandia zebra (zebra mbuna): 101486461
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Entry
101486461 CDS
T02814
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03013
Nucleocytoplasmic transport
mze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101486461
03015 mRNA surveillance pathway
101486461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101486461
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101486461
5.6.2.5 RNA 5'-3' helicase
101486461
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101486461
mRNA cycle factors
Common to processing body (P body) and stress granule
101486461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101486461
NCBI-ProteinID:
XP_004542470
UniProt:
A0A3P9B432
LinkDB
All DBs
Position
LG18:complement(17887938..17900258)
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AA seq
1109 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHIFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSNMYFQTHDQIGMIGTGANPMSSMNI
PIPFNLVMPPIPPPGYLGQVNGPTAGRGGGLKGKSGSGGGGGTRGGRQRNRGNHSGGTDR
GQHGGQMTTSQTSQDQGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYHGGVTGLSQY
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctggacaccgaggaa
gccgagctgctgggagcggacactcagggctccgagtacgacttcaccgattttaccctg
ccgagccagacccagactcaaggccaaacccagagtcagctagacggccaggtcaatggc
cctgatggtgtgttacagaatggagacgaccctgttgtgaaggccagccaattactggca
gagttgaactttgaggaggatgaggaggacacttactataccaaggaccttcctgtgcat
gcttgcagttattgtgggattcacgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttttgcaacggccgtggaaacacttctggcagccacattgttaaccacctggtg
agggcaaagtccaaggaggtgaccctgcataaagatggccccctgggggaaacggttttg
gagtgctacaactgtggctgtcgcaacgtcttcttgcttggcttcattcctgccaaggct
gactcagttgtggtgttactgtgcaggcagccatgtgctagccagagtagcctgaaagac
atcaactgggacagctcacagtggcagcctttaatccaggaccgctgctttctttcctgg
ttggtcaaaattccctcagaacaggagcagctccgggcacgccagatcactgctcagcag
atcaacaagctggaggagctgtggaaggaaaatcccacagcaaccttggaggacctggaa
aagcctggagtagatgaggagccccaacatgtcctgcttcgctatgaggatgcctaccag
taccaaaacatttttggtcctcttgtgaagctggaagctgactatgataagaaactcaaa
gagtcacagacacaagacaacatcacagtaagatgggacttgggcctgaataagaagagg
attgcttatttcacccttcccaagacagactcagatatgcggctgatgcagggagatgaa
atttgcctgagatacaaaggagacctggcccctccttggaaaggcattggacatgtcatc
aaagtccctgacaattatggtgatgaaatagccatcgagttaaggagcagtgccggggct
ccagtggagatccctcacatctttcaggtggactttgtgtggaagtccacttcctttgat
aggatgcagagtgctctgaagacatttgctgtggatgagacttcagtgtctggttacatc
taccacaaactgctgggacatgaggtagaggatgtggtcatcaagtgccagctgcccaaa
cgcttcactgctcaaggcctccctgaccttaaccactcccaggtgtacgctgtgaaaaca
gtgctgcagcgccccctcagtctgatccagggcccacctggcacaggaaagacggtcacc
tctgccaccattgtgtaccacctggccagacaaggaaatgggcctgtgctggtttgtgct
cccagtaatattgcagttgatcagctcactgagaagattcaccaaacagggctcaaggtg
gtgagactctgtgccaagagcagagaggccatagactcaccagtgtcattcctggctctg
cacaaccagacccgtaatatggacagtatgccagagcttcagaaactccaacagctgaag
gatgagactggagagctgtcctcctcagatgagaagcgctacagagctctgaggcgcact
gctgagagagagttgcttatgaatgctgacgtgatctgctgtacatgcgttggggcagga
gatcctcgtctggccaagatgcagttcagatctatcctgatcgatgagagcacccaggcc
accgagccagagtgcatggtgcctgtagtccttggagccaagcagttgattcttgtgggt
gatcactgccagctgggacctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgttcgagcgtcttgtagttttggggatccgaccaatccgtctgcaggtccag
taccgcatgcacccggccctcagtgccttcccttccaacatcttttatgagggttctctg
cagaacggagtcactgctgcggaccgtgtgaaaaaaggcttcgacttccagtggccccaa
ccagacaagccgatgttcttctatgtcacccaaggccaagaggaaattgctagctctgga
acatcttatttgaacaggactgaggcagccaatgtggagaaaataacaacgaggttgctg
aaggctggagcaaaacctgatcagattggtatcatcactccctatgagggtcagaggtcc
tatctggtccagtacatgcagttcagtggctccctccacaccaaactctaccaggaggtg
gaaatagccagtgttgatgctttccaagggagagagaaagacttcatcatcctctcctgc
gtgagggccaacgagcaccagggcatcggcttcctcaatgatcccagacgtcttaacgtg
gcactcaccagggccagatatggcgtgatcattgtgggaaaccccaaagccctgtccaag
cagcctctgtggaaccacctgctcaattactacaaggagcagaaggtcctggttgaaggc
ccactcaacaacctgagggagagcctcatgcaattcagcaagccccgcaagctggtgaac
accatcaaccctggtggccgattcatgagcacagctatgtatgatgcgagggaggccctc
attcctggatctgtttatgatcgtagcagcaacgggcgttcgtccaacatgtatttccag
acgcatgaccagatcggtatgattggcacaggtgccaatcccatgtcctccatgaacatc
ccgatccccttcaaccttgtgatgcctccgattcctccaccaggatacttgggacaggtg
aatggacctacagcaggtcgcggcggcggtctaaagggcaaatcgggcagcggaggaggt
gggggaactcgaggtggccgtcaaagaaaccgtggaaaccacagcggtggaacagaccgc
ggacagcatggaggtcaaatgactacaagccagactagccaggaccagggctcccagccg
ttctcccagggccctctgacgcagggctacattaacatgagccagccgtcacagatgagc
cagcctgggctctcccagcctgaactctcccaggacagttaccttggagatgagttcaag
tctcagattgatgtggctttgtcccaggattccacgtaccagggggagcgggcctaccat
ggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
