Maylandia zebra (zebra mbuna): 101486686
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Entry
101486686 CDS
T02814
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101486686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mze03041
]
101486686
03009 Ribosome biogenesis [BR:
mze03009
]
101486686
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101486686
Spliceosome [BR:
mze03041
]
Complex A
U2 snRNP components
U2 related factors
101486686
Complex B
101486686
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
101486686
Ribosome biogenesis [BR:
mze03009
]
Eukaryotic type
90S particles
Helicases
101486686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_25
nSTAND3
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
101486686
NCBI-ProteinID:
XP_004549552
UniProt:
A0A3P9D7I4
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All DBs
Position
LG6:complement(17653430..17665071)
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDREPKPSSAP
SNSTPAASALPPLKQMVLQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFTDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRSLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacatcgtttggatttgggtgatgactactcctccagcaagaagaggtcc
gacgggagagaccgggaccgtgacagagaccgtgaggaccgttcgagggatagggaccga
gacagagaccgtgatcgggacagagaccgggacagagaaccaaagccatctagtgcccca
tctaacagcacacccgctgcttcagccttaccaccgctcaagcaaatggtcctacaacag
cagatcaacccattcaccaacctgccccatactccccgctactatgagatcctgaagaag
aggctacagcttccagtgtgggagtacaaggaaagcttcaccgacatcatcacacgtcac
caaagctttgtgcttgttggagagactggctccggcaagacaacacagatcccacagtgg
tgtgtggatatggttagaagcttgcctggtcctaagcgggcagtagcctgtactcagccc
agaagagtagcagccatgagtgtggctcagagggtggcggacgaaatggacgtcatgctt
ggacaggaagttggctactccatccgatttgaggattgtagctctgccaagactatatta
aagtacatgacagacggtatgttgttaagagaggccatgaatgacccactgctggaacga
tatggtgtgatcattctggatgaggctcatgagagaactctggccacagacatcctgatg
ggagtactgaaagaagtggttcgtcagagatcagatctgaaggtgattgtcatgagtgcc
acactagatgctgggaagttccaggtgtactttgacagctgtcctcttctaactattcct
ggacgtacacatcctgttgagatcttttacactccggagccagagcgggactaccttgag
gccgcaatccgtactgtcatccagattcatatgtgtgaggaagaggaaggtgattgtctt
ctcttcctcaccggtcaagaggaaattgatgaggcatgcaaacggatcaagcgtgaggta
gatgacctgggtcctgaggtcggagacatcaaaatcattccactgtattccacgttgcct
ccacagcagcaacaaagaatctttgagcctcctcctccaaggaagccaaatggtgcaata
ggaagaaaggttgtggtgtcgacaaatatcgctgagacttctctaacaattgatggcgtg
gtgtttgtcattgaccctggatttgccaaacaaaaggtgtacaatcctcgaatcagagtg
gagtctctgctcgttacagccatcagtaaagcttctgcccagcagagggcaggacgagct
ggaagaacacgtccagggaaatgcttccgtctctacacagagaaggcctacaaaacagag
atgcaggataacacataccctgagattcttcgctcaaacttgggatctgtagtgcttcag
cttaaaaagctgggtattgatgaccttgtccactttgacttcatggatccacctgctcct
gagacgttgatgagggcccttgagctgcttaactacctggcagctctcaacgatgacggt
gacctgacggagctgggctccatgatggcagaatttcctctggacccccaactggcaaag
atggtcattgcgagctgcgagtttaactgctccaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgtcctacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcacattgatggagaccacttgacgctgctcaacgtctatcacgcc
ttcaaacaaaaccatgagtctaaccagtggtgctatgacaactttgtcaactaccgctcg
ctgatgtctgccgacaatgtgcggcagcagctgtccaggatcatggaccgcttcaacttg
cctcgtcggagcacggagttcacaagcagagattactacatcaacatccgacgggcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggccattacctcacagtg
aaagacaaccaagtggtccagctgcacccatctacagtcctggaccacaaaccagagtgg
gtgctctacaacgagtttgtcctcaccaccaagaactacatccgcacatgcacagacatc
aagccagagtggctggtgaagattgcacctcagtactacgaaatgagtaacttcccacaa
tgtgaagctaagcgacagctggagcgaatcattgccaaactagagagcaaagagtattcc
cagtactga
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