Maylandia zebra (zebra mbuna): 101487974
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Entry
101487974 CDS
T02814
Symbol
cpsf1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101487974 (cpsf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mze03021
]
101487974 (cpsf1)
03019 Messenger RNA biogenesis [BR:
mze03019
]
101487974 (cpsf1)
Transcription machinery [BR:
mze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101487974 (cpsf1)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101487974 (cpsf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
PHTB1_N
UspB
Motif
Other DBs
NCBI-GeneID:
101487974
NCBI-ProteinID:
XP_004563761
LinkDB
All DBs
Position
LG22:complement(33589156..33608025)
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AA seq
1470 aa
AA seq
DB search
MYAVYRQAHTPTSVEFSVYCNFISSKEKNLVVAGTSQLFVYRIIHDVESTSKADKSSDSK
SRKEKLEQVASFSLFGNIMSMASVQLVGASRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELRDGFVQNVHIPIVRVDPENRCAVMLVYGTKLVVLPFRKDTLTDEQESGVGEG
PKSSFLPSYIIDVRELDEKLLNIIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
VAISLNIMQKVHPVIWSLSNLPFDCTQVMAVPKPIGGVVVFAVNSLLYLNQSVPPYGVSL
NSQTNGTTAFPLRVQDEVKLTLDCCQSDFIAYDKMVISLKGGEIYVLTLITDGMRSVRAF
HFDKAAASVLTTCMVTMEPGYLFLGSRLGNSLLLKYTEKLQETPAEEGKERQDKEKDKDK
QEEPPSKKKRVESSTNWTDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANASMG
EPAFLSEEFQSNPEPDLEVVVCSGFGKNGALSVLQRSIRPQVVTTFELPGCHDMWTVISS
DVKEDKTAAKSDESEDGAEAETGDDGEEGEKDKEEVEKEEEEKKTEPSMEDDAKKHGFLI
LSREDSTMILQTGQEIMELDTSGFATQGPTVYAGNIGDNKYIIQVSPMGLRLLEGVRQLH
FIPVDLGSPIVHCSVADPYVVIMTAEGVVTMFVLKSDSYMGKMHRLALQKPQIPSQSRVI
TLCAYRDVSGMFTTENKVSCSIKEDTIRSQSEAETIIHDMSNTVDDEEEMLYGDSNASAT
PAKEDMNRSFVAPATSGSEATSSKAEPTHWCMIIRENGVMEIYQLPDWRLVFLVKNFPVG
QRVLVDSSSGQSATQGEGKKEEVTRQGEIPLVKEVALVSLGNNHSKPYLLVHVEQELLIY
EAFQYDQQQPQNNLKVRFKKVPHNINFREKKSKLKKDKKAESSATEENSGVKGRIARFRY
FEDISGYSGVFICGPSPHWMLVTSRGALRLHPMTIDGSIESFSPFHNINCPKGFLYFNKQ
GELRISVLPTYLSYDAPWPVRKIPLRCTVHYVSYHVESKVYAVCTSVKEPCTRIPRMTGE
EKEYEVIERDERYIHPQQEKFSIQLISPVSWEAIPNTRIDLEEWEHVTCMKTVALRSQET
VSGLKGYIAAGTCLMQGEEVTCRGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVT
ALCHCNGYLVSAIGQKIFLWVLKDNDLTGMAFIDTQLYIHQMFSIKNFILAADLMKSISL
LRYQEESKTLSLVSRDAKPLEVYSIEFMVDNNQLGFLVSDRDKNLYVYMYLPEAKESFGG
MRLLRRADFNAGANINTFWRMPCRGALDASSKKALTWDNKHITWFATLDGGIGLLLPMQE
KTYRRLLMLQNALTTMLPHHAGLNPKAFRMLHSDRRSLQNPVKNILDGELLNKYLYLSTM
ERSELAKKIGTTQDIILDDLLEIDRVTAHF
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgtatgccgtgtacagacaagcccacacaccgacctcagtggagttttctgtctactgc
aattttatatccagtaaggagaagaacttggtcgtagctggaacgtctcaactgtttgtt
tacaggatcattcatgatgtggagagtacttcaaaggctgacaagtcatctgattccaaa
tctcgcaaagagaagctggagcaggtggcttccttttctctctttgggaacatcatgtct
atggccagtgtacaacttgttggagccagcagagatgcactccttttgagtttcaaagat
gcaaagctgtctgtggtagagtatgatcctgggacacatgatcttaagacactgtctctt
cattactttgaggagccagagctcagagatggctttgtacagaatgtacatattcccatt
gtccgtgtagatccagagaatcgctgtgctgtaatgctcgtttatggcaccaaactcgtg
gtgctgccattccgaaaggacacgctaacggatgaacaagagagtggcgttggagaagga
cctaaatccagcttcttgcccagctacatcattgacgtccgtgaactagatgagaagctc
ctcaacatcattgacatgaagttcctccacggctactacgagcccacgttgctcattctt
tttgagcccaaccagacatggcctgggcgtgtggctgtccgtcaggacacttgcagcatt
gttgcaatctccctcaacatcatgcagaaggttcatcctgtcatctggtctctcagtaat
ctgccctttgattgtacacaggtcatggctgtccccaaacccatcggtggtgtggtggtg
tttgctgtgaattcgctgctctatctgaaccagagcgttcctccctacggagtctcgctc
aattctcagacaaatgggaccacagcctttcctctgcgtgtacaagatgaagtgaagctc
acgctggactgttgtcagtctgactttattgcttacgacaagatggtgatctcgctgaaa
ggaggggagatttacgtgttgacactgataactgacggcatgaggagcgtgcgcgctttc
cactttgacaaagctgctgccagcgtcctgacgacctgcatggtgaccatggagcccgga
taccttttcctgggttcccgcctcggaaactcgctgctcctgaagtacacagagaaactg
caggagacgccagcggaggaaggcaaagaaaggcaggacaaagaaaaagacaaagacaaa
caagaggaaccaccaagcaaaaagaagcgagttgaatcctccaccaattggaccgatgag
gtggatgagatagaagtgtatggaagtgaggcccagtcaggcactcagctggccacctac
tcctttgaggtgtgtgatagcatactgaacattgggccttgtgcaaatgcctccatgggt
gaacctgctttcctgtccgaggagtttcagagcaaccctgagcctgacctggaagttgta
gtttgctctggcttcggcaagaatggtgccctgtctgtgcttcagagaagcatccgaccc
caagtagtcactacgtttgagttgccaggttgtcacgacatgtggactgtgatctcaagt
gacgtcaaagaagacaaaacagctgcaaaaagcgacgagtcagaggatggggctgaggct
gagacgggtgatgatggtgaagagggagaaaaggacaaagaggaggtggaaaaggaggaa
gaggagaagaagacggaaccttccatggaggatgatgcgaagaagcatggcttcctcatt
ctgagcagagaagattcaacaatgatccttcaaacaggtcaggagatcatggagctggat
accagtggttttgcgactcagggacccactgtgtatgctgggaacattggggacaacaag
tacatcattcaggtctctcccatgggccttcgtctgctggaaggagtgagacagctccac
ttcatccccgtggacctgggttctcccatagtgcattgctctgtggctgacccatatgtg
gttatcatgactgctgagggagtggtcaccatgtttgtgctgaagtctgactcgtacatg
gggaagatgcaccgactggcactgcagaaaccacagattcccagccaatctcgtgtcatc
acactgtgcgcctaccgagacgtgagcggaatgtttacaacagaaaacaaagtgagctgc
tccatcaaagaggacaccatcaggagtcagtctgaagcagaaaccatcatccatgacatg
agcaacacagtggatgacgaggaggaaatgctgtacggagactcgaatgcgagtgcaacg
cctgccaaggaagatatgaaccgcagctttgtggcaccggcaacgtctgggagcgaggcg
acctcgagcaaagcagagccaacccattggtgcatgatcatcagggagaatggagtgatg
gagatttatcagctgccagactggcgcttggtgttcctggtgaagaacttcccagtgggc
caaagggtgctggtggacagttcctctggccaatcggcaacacagggggagggtaaaaaa
gaagaagtcacccgtcaaggagagattccattagtcaaagaagtggctttggtttcactt
ggcaacaatcacagtaaaccatatttgctggtccacgttgaacaagagcttctgatctat
gaagcgttccagtatgatcaacaacagccacaaaacaacctgaaagtccgcttcaaaaaa
gtaccccacaacattaacttcagggaaaagaaatccaagctcaagaaagataagaaagca
gagagcagtgccaccgaggaaaattctggcgtgaaaggtcggattgccaggttcagatac
tttgaggacatctctggatactcaggagtatttatctgcggcccgtctcctcactggatg
ttggtcacgtctcgtggagcgttgaggcttcacccaatgaccattgatggctccattgag
tctttctcccccttccataatatcaactgccccaaaggttttctgtactttaacaaacag
ggcgagctaaggatcagcgttttgcccacgtatctgtcctacgacgccccgtggccagtc
agaaaaatccctctgaggtgcaccgtccactatgtctcctaccacgtggaatccaaggtg
tatgctgtgtgcaccagtgtgaaagaaccatgcacacgcattccgaggatgacaggagag
gagaaggaatacgaagtcatagaacgagatgaacgctacattcatccgcagcaggagaag
ttctcaatccagctcatctctccagtgagctgggaggccattcccaacacacggattgac
ctggaggagtgggaacacgtcacgtgcatgaagacggtggcactgaggagtcaggagact
gtgtctggactgaagggttacatcgcagcaggaacgtgtctgatgcagggggaggaggtc
acctgcaggggccggattctgatcctggatgtgattgaagtggtgccggagcccggccag
cccctcaccaagaacaagtttaaagtgctctatgagaaggagcagaagggaccggtgact
gctctgtgtcactgtaacggatacctggtgtcagccatcggccagaagatcttcctgtgg
gtcctgaaggacaatgatctgacgggtatggccttcatcgacacgcagctctacatccac
cagatgttcagcatcaagaatttcatcctggctgctgacttgatgaagagcatctcgtta
ctgcgctaccaggaggagagcaagacgctgtctcttgtcagcagggatgcaaagccttta
gaagtctacagcatcgaattcatggtggataacaaccagcttggattcttggtgtcggat
cgagacaagaacctctatgtttacatgtatttgcctgaagctaaagagagctttggagga
atgcgcctgctgaggcgagcggacttcaacgccggagctaacatcaacactttttggcgg
atgccgtgcagaggggcgctggacgctagcagcaaaaaggctctaacctgggacaacaag
cacatcacgtggttcgcaaccctggatggaggcatcggcctgctcctccccatgcaggag
aagacttaccgccgtctgctgatgttgcaaaatgcgctcaccaccatgctgcctcatcac
gcgggtctgaacccaaaagccttcagaatgctgcacagcgacaggcggagccttcagaat
cctgtgaagaacatcctggatggagagctcctcaacaagtacctgtacctcagcacgatg
gagcgcagcgagctggccaagaagatcgggacgactcaggacatcatcctggatgacctt
ctggagatcgacagagtaacggctcatttctga
DBGET
integrated database retrieval system
