Methanosalsum zhilinae: Mzhil_0871
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Entry
Mzhil_0871 CDS
T01541
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mzh
Methanosalsum zhilinae
Pathway
mzh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mzh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mzhil_0871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mzh03019
]
Mzhil_0871
Enzymes [BR:
mzh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mzhil_0871
Messenger RNA biogenesis [BR:
mzh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mzhil_0871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
ERCC3_RAD25_C
P-loop_SecA
UTP25_NTPase-like
SWI2_SNF2
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AEH60733
UniProt:
F7XL25
LinkDB
All DBs
Position
950680..952035
Genome browser
AA seq
451 aa
AA seq
DB search
MSFESFNIKSQIVRALNNEGITAPTDIQEQTIPLIASGKDVIGISHTGSGKTAAFAIPLL
DKIVRGQGIQSLIVVPTRELASQISNEFNKFGKYIDFSIATIYGGVAIGPQIRQLSRADI
VVATPGRLLDHVQRKTIDLSNVETLVLDEADIMVDMGFFEDIKKILKAVPHKRQIALFGA
TISDEINQLKTKYMNNPAFEKSEAHVDDTLLKQYYYRVDQKEKFSLLVHLLREETSDRVI
VFCPTRANVETVSKNLRSNGIKANMIHGKIKQSNRLKVIDNFNKGRPKILIASGVASRGL
DIKGVSHVYNYGLSHNPEEYIHRIGRTARAGESGKAITLLSPGDNKVFKTIVKKYNVNIE
NLECDDFSRVQFDSRSSGSSNNKFRDNKSRNKNKESGPRSSWKKVQKPPGSSKDQKMNGN
RKRRVKYRNISDDKVASKIKAAKPKRPVRNQ
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgaatcatttaatataaaatcacagatagtcagagcgcttaataatgaaggt
ataacggctccaacagatattcaggagcagacaattcctttgatcgcttcaggaaaagat
gttataggaatttcacataccggatccggaaaaactgctgcttttgcgatacccttactc
gataaaatagtacgtgggcaaggtattcaatcgttaattgtagttcctacccgtgaactt
gcttctcagatatccaatgaatttaacaagtttggaaaatatattgatttttcaatagca
accatttatggtggagttgccattggtccccagatcagacaactatccagggcagatatt
gtggtagctacaccaggcagattacttgatcatgttcagagaaagaccatagatttatcc
aatgttgaaactctggtccttgatgaagctgatattatggttgatatggggttttttgag
gatattaaaaagatattgaaggctgtaccccataaaagacagattgctctatttggggca
acaatatcagacgaaataaatcagctcaaaacaaaatatatgaataatcctgcatttgaa
aaatcggaagcgcatgtagacgatacactattaaagcaatattactacagggttgaccag
aaagaaaaattctctttacttgtacatcttctcagggaagaaacttcagatagagttatt
gtattctgtccaacacgcgcaaatgtggaaacagtttcaaagaacctgcgatcaaatgga
ataaaagccaacatgatccatggtaaaataaagcagagcaaccggcttaaggtaatagat
aatttcaataaaggaagacccaagattcttattgcttcaggtgttgcttccagaggtttg
gatataaaaggtgtaagccacgtttataattatggtctctcccacaatccggaagagtat
attcacaggatcggacgtactgcaagagccggtgaatctggtaaagcaattaccctatta
agtcccggtgacaataaagtattcaaaacaattgttaaaaaatataatgtaaacattgaa
aatcttgaatgcgatgatttttccagggttcagttcgattccagaagcagtgggtcaagc
aacaataaatttagggataacaaatccagaaataagaacaaagaatctggtcccagatcc
tcatggaagaaagttcagaaaccacctggctcaagtaaagatcaaaaaatgaatggaaac
agaaaaaggcgagtaaagtataggaatatatctgacgacaaagtagcttcaaaaataaaa
gctgcaaaaccaaaaagaccggtcagaaaccaataa
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