Methanosalsum zhilinae: Mzhil_1690
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Entry
Mzhil_1690 CDS
T01541
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mzh
Methanosalsum zhilinae
Brite
KEGG Orthology (KO) [BR:
mzh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mzh03016
]
Mzhil_1690
Enzymes [BR:
mzh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mzhil_1690
Transfer RNA biogenesis [BR:
mzh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mzhil_1690
Prokaryotic type
tRNA splicing ligases
Mzhil_1690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEH61525
UniProt:
F7XPZ8
LinkDB
All DBs
Position
complement(1808717..1810189)
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AA seq
490 aa
AA seq
DB search
MEDNNDQDNEVFDLLKRIDEYTWEIPREYKPFMRVPGRIYVSRKMLNDVEKQTIDQVANV
ASLPGIQKYSMAMPDAHLGYGFPIGGVAAFDSEEGVISPGGVGFDINCGVRLIRTDLHVD
DVRPVIRELIKKLFEAVPSGLGSKSRLRASDSELDDAFVHGSRWAVEAGYGVEADIEHCE
GSGFIEGADPSKVSAKARKRGKPQLGTLGSGNHFLEVQYVDNIYDNDAASVFGLEEGQVT
IMVHCGSRGAGHQICTDHLRVLSQSVKNYGISIPDKQLACAPATSTEAQDYFKAMACAAN
YAWANRQIITHWTREVFEQVFGRDAESLGMDLVYDVAHNVAKLEEHIIDGRKKKVYVHRK
GATRAFPPGHSEVPRKYRDIGQPVLLPGSMGSASFVLHGTQEGMDLTFGSACHGSGRAMS
RKQAKGTYSGEDVKKKLEKMGIYVEAMSPAVIAEEAPEVYKKSSDVVDVVHELGIARKVA
RVLPMGVAKG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggaagataataatgatcaggataatgaagtttttgatctcctaaaaaggattgatgaa
tatacctgggagatccccagagaatataaaccattcatgagagtgccgggccggatatat
gtatccaggaagatgctgaatgatgtagaaaagcagacaattgaccaggttgcaaatgtt
gcatcccttccaggcatccagaagtattcaatggcaatgccagatgcccatctaggttat
ggttttcctatagggggagttgcagcctttgacagtgaggaaggtgttataagtccgggt
ggagttggttttgatataaactgcggtgtgcgcctgatacgtaccgatcttcacgtggat
gatgtcaggcctgtgatccgtgaacttataaagaaactgtttgaagccgttccctcaggg
cttggatcaaagagccgtctgagagcatctgacagtgaacttgatgatgcttttgttcat
ggttcacgctgggccgttgaagcagggtacggggttgaagctgatatagagcactgtgaa
ggcagcgggttcattgagggagccgatccttccaaggtaagcgccaaagcaagaaaacgc
ggaaagccccagctgggaacccttggcagtggaaaccatttccttgaagtgcagtatgtg
gacaatatctatgacaatgatgcggcttcagtctttggtcttgaggaaggacaggtaacg
ataatggtgcactgcggatcacgcggagccggtcatcagatatgtactgaccatcttcgt
gtactttcacagtcagttaaaaactatggaatatctatacctgacaagcagcttgcctgc
gctcctgccacctcaacagaagctcaggactatttcaaggcaatggcatgtgctgccaac
tatgcctgggccaaccggcagatcatcacccactggactcgtgaggtgtttgagcaggta
tttggacgggatgcagagagtctgggtatggatctggtatatgatgtggcacataatgtt
gcaaagctggaggaacacataattgacggcaggaagaaaaaggtgtacgtgcatcgcaaa
ggtgcaacccgtgcattcccgccaggtcacagcgaggtgccccgaaaataccgtgatatt
ggccagcctgtccttcttccaggaagtatgggcagtgcctcctttgtactccatggcaca
caggaggggatggacctaacctttggcagtgcgtgccatggttcaggcagggcaatgagc
agaaaacaggcaaaaggtacatacagtggcgaggatgttaagaaaaaactggaaaagatg
ggaatctatgttgaggcaatgagtccggcggtgattgcagaagaggcccctgaggtatat
aagaagagcagtgatgtggtggatgttgtccatgaactcgggattgccagaaaggttgcc
agagtacttccaatgggagttgcaaaaggttaa
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