Methanolobus zinderi: HWN40_04200
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Entry
HWN40_04200 CDS
T06665
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
mzi
Methanolobus zinderi
Pathway
mzi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mzi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HWN40_04200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mzi03021
]
HWN40_04200
Transcription machinery [BR:
mzi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HWN40_04200
Prokaryotic type
Archaeal type
TFB
HWN40_04200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Lar_restr_allev
Zn_ribbon_LysW
A2L_zn_ribbon
Cas12f1-like_TNB
Ribosomal_S27e
PolC_DP2_central
Zn_ribbon_IS1595
HypA
HTH_Tnp_ISL3
BRF2-like_C_cyclin_rpt
FtrD-like
DZR
HTH_AsnC-type
Zn_ribbon_PaaD
DUF5795
Motif
Other DBs
NCBI-ProteinID:
QLC49516
UniProt:
A0A7D5EDJ4
LinkDB
All DBs
Position
complement(838938..839951)
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AA seq
337 aa
AA seq
DB search
MVEVERVRYSDTSEREKIRAMIKARKEKEKDMEVEKAKVQCPECGSRSLVQDYERAELVC
ADCGLVVDAEFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSRVSRKEIGRTYRFISRELSLK
LMPTSPIDYVPRFCSGLNLKGEVQSRGVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaagtcgaaagagtacgttattctgatacctccgaaagggagaaaatacgtgca
atgatcaaagcacgtaaagaaaaagaaaaggacatggaagttgagaaggcaaaggtccag
tgtcctgagtgtgggagccgcagtttagtacaggactatgagagagccgaactcgtatgt
gctgattgtgggctggtagttgacgcagaattcgttgatgaaggacctgaatggcgtgca
tttgaccatgatcagagaatgaagcgctcccgtgtaggtgcgcctatgacctacaccatc
cacgataagggtctctccactatgatagactggaggaaccgtgactcgtatggtaagtcc
atctcatccaagaacagggcacagctttacaggctgagaaaatggcagcgtaggatacgt
gtgagtaacgctaccgagcgtaaccttgcattcgcactttccgaacttgaccgtatggca
tcagcactcggtcttccgaggacggtacgtgaaaccgctgctgtggtttacaggaaagcg
gtcgataagaaccttatccgtggaaggagtattgaaggtgtagcagcagcagcattgtat
gcagcatgccgccagtgcagtgtcccgaggacacttgatgagataggagaggtatcaaga
gtaagcaggaaagagatcggtagaacataccgtttcatctcaagggaactgtcgcttaag
ctcatgccaacctcaccaattgactatgtaccaagattctgttcaggactgaaccttaaa
ggagaagtgcagtccagaggagtggagatcttaaggcaggcttccgagaaagagcttaca
agcggacgtggtccaaccggtgtggcagcggcagcaatttacatcgcatccatcctttgc
ggtgagcgccgtacacagcgcgaggtcgccgatgttgcaggtgtgaccgaggtcacgatc
cgtaacaggtacaaggaacttgcagaagagctcgacatcgagatcattctctga
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