Methanolobus zinderi: HWN40_09065
Help
Entry
HWN40_09065 CDS
T06665
Name
(GenBank) KH domain-containing protein
KO
K03679
exosome complex component RRP4
Organism
mzi
Methanolobus zinderi
Pathway
mzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWN40_09065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mzi03019
]
HWN40_09065
Messenger RNA biogenesis [BR:
mzi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HWN40_09065
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
HWN40_09065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N_2
ECR1_N
RRP4_S1
KH_2
RRP40_S1
KH_1
S1
Motif
Other DBs
NCBI-ProteinID:
QLC50377
UniProt:
A0A7D5E9E0
LinkDB
All DBs
Position
complement(1846456..1847220)
Genome browser
AA seq
254 aa
AA seq
DB search
MEREIVFPGQLLSENKADSGSGTYVKDGKVYSLLYGVKNTRNKISVIPFSGKYIPSSKDF
VIGTVIEVTPSNWIFDIGSPYDGLLHVSEYPKRVDSDKMPGIMDVGDSALLRVKDVNPSM
KVELSMRERGLKPLKVGRIIEVVPAKVPRVIGHGGSMVSMLKKEADSEIFVGQNGRIWIN
GKENDMDRLTEAIDMIMKQSHTSGLTDRVCQFLRDEGDVDAEEDLAEAEEVEDESEIPED
TYRKVDALLDETDD
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggaacgagaaatagtgtttccgggccagctcctgtctgagaacaaggcagactcgggc
tccggtacttatgtgaaagacggaaaggtctattctcttttatacggggtcaagaataca
agaaacaagatatccgtgatcccgttctctggaaaatacattccttcaagtaaggatttt
gtaattggtactgttattgaggtaactccttcaaactggatatttgacatcggttctccc
tatgatggtctgctgcatgtctccgagtatcctaaaagagttgactccgacaaaatgcca
ggtataatggatgttggtgattcagcactgttacgtgttaaagatgtgaatccttccatg
aaggtggaactttccatgcgtgagaggggcttgaagcctcttaaagtgggcaggataatc
gaagttgtacctgcaaaggtcccccgggtcataggacacggcggctcgatggtctcgatg
cttaaaaaagaagcagacagcgagatcttcgtgggccagaacggaaggatctggatcaac
ggaaaagaaaatgatatggatcgtcttaccgaagctatagacatgatcatgaagcagtcc
catacaagcggactgacggacagggtctgtcagttcctgagagatgagggagatgttgat
gctgaggaagaccttgctgaggccgaagaagtagaagatgaaagcgaaattcctgaagat
acctacagaaaggtagacgcacttctggatgaaacggacgattga
DBGET
integrated database retrieval system
