Candidatus Mycalebacterium zealandia: GKS04_02150
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Entry
GKS04_02150 CDS
T10121
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mzl Candidatus Mycalebacterium zealandia
Pathway
mzl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mzl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GKS04_02150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mzl03400
]
GKS04_02150 (mfd)
Enzymes [BR:
mzl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GKS04_02150 (mfd)
DNA repair and recombination proteins [BR:
mzl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GKS04_02150 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
IstB_IS21
SNF2-rel_dom
AAA_30
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QMU55984
UniProt:
A0A7D7VF84
LinkDB
All DBs
Position
complement(433923..437126)
Genome browser
AA seq
1067 aa
AA seq
DB search
MPQNGRNHSGQTAQHVAQTSAKTIADEFSHFAYDTGNRIGKLIALLRLDRAKIPVSGLAG
GAAFLTAVLTQKHLKTRVLYIAGSKENLRRASKTVEIFTGEEPPVANPSKTSFAARAQEA
SIVCADIETIFEKIVSPSFLQSALISVKTGDEIERDSFTRLVSEAGYEKKEFARLEGEMS
VRGAIVDIARAGKQPPLRVEFEGDKIRSMRTFDPQTQISEARTEKERILPADSADGGADL
SSIFDCCGKNTVVFIETSQGGIERTLKDFAPENGGNTLSVREITEEIEQRKTVEIPAFGA
GEIDFQTSKTALADTERTTSGKMLGAAKRLRESVYKLKLFLESESEIEKMREIFAEQGVD
AAEFLEGTSGGGFVFPDIGTAFIDEHDFAEKIPAVKPHGAKVKSPMSVFEADFGDIKDGD
LIVHREFGIGIFRGLKNLTIRGVKADFIECEYHGGDSVYVPVSKFKLLHRYVGNEDGTPK
IDKLGSAVWVKTVRGAKQATETVARELLELYASRKSDDGHGFSKPDSEFREFEMGFMFEE
TPDQKKAIEDVMEDMESPRPMDRLICGDTGFGKTEVALRAAVKAVMDGFQVAFIAPTTLL
VAQHLKTARSRLEKFPVNAAALSRFNSPSEGKAVLEGMERGTADIVIGTHKLLGNKIKFK
NLGLLIIDEEHKFGVRHKEKLKTLKANLDVLSLSATPIPRTLQLSLTGIRDISTIHSPPH
GRLPVKIQIQKWDAPLIRDLVEWEIERGGGVFFIHNRIETIATVAKGLKEIVPHVSTEVT
HGRMGKKDLETKIEKFARGDVDMLITTSIVESGLDITRANTIIINDAHTFGIADLYQLKG
RVGRGREQAYACLLVRDKHLLTETAWKRLERFAELWDFGSGYELAFSDMRMRGVGNLFGV
EQSGHVAAVGVEFYLDMLREAVEKLKTGKSHRKVEPEIKTKIEARIPEDYVKNSGERLVF
YKRISSAATMSEVKKIKDELTDRFGPVPCRLANLLALTELKTVLKKHSVGFMKIDAENAG
AYATKDGTDTKALFSKTRNGWKIRSLGGLPEPAAKSAARLLSSIKQV
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaaaatgggagaaatcacagcggacaaactgcgcaacacgtagcgcaaacatcc
gccaagaccatcgcggatgaattcagccactttgcgtacgacaccggaaacagaatagga
aaactcatcgcccttttgcggcttgaccgcgcaaagataccggtttccggactcgccgga
ggcgcggcatttcttaccgccgttctcacacaaaaacacctgaaaacccgtgttctctat
attgccggctcaaaggaaaatctccgccgtgcgagcaaaactgtggaaatcttcacgggc
gaagaacctccggtcgcgaacccaagcaaaacctctttcgcggcgcgggcgcaggaggcc
tcgattgtgtgcgcggatattgaaacaatctttgaaaaaatcgtctcgccgtcttttctg
caatcggcgttaatttctgtaaaaaccggagatgaaattgagcgcgacagtttcacacgg
ctggtttccgaagccggctatgaaaaaaaggagttcgcgcgccttgaaggtgagatgagc
gtcagaggagcgattgttgacatagcacgcgcgggaaaacagcctcctctgcgcgttgag
ttcgagggcgacaaaataaggtcaatgaggacttttgacccgcaaacgcaaatatccgaa
gcgcgaaccgaaaaagagcggattctgcccgccgacagcgcggacggcggcgcggatttg
tcatcaatttttgactgctgtggaaaaaatacggtcgtttttattgaaacttcgcagggc
ggcattgagcggactctcaaagacttcgctcctgaaaacgggggaaacactttgagcgtc
cgtgaaatcacagaggagatagaacaacgcaaaactgtggaaattccggcgttcggcgcg
ggcgaaattgattttcaaacctcaaaaaccgcgctcgcggacacagaaagaaccacttcg
ggcaaaatgctcggcgcggcaaaacgcctgcgcgaaagcgtctataaactgaaacttttt
cttgagagcgaaagcgaaattgaaaaaatgagagagatattcgccgaacagggcgtggat
gccgcggagtttcttgaaggaacatcgggcggagggtttgttttccccgacatcggaacg
gcttttatagacgagcacgattttgctgaaaaaatccccgccgtaaaaccccacggcgcg
aaggtgaaatccccgatgtccgtgtttgaagcggatttcggagatataaaagatggcgac
ctcatagtccaccgcgaatttggtatcgggatattccggggtctgaaaaatctgaccata
agaggagtaaaagccgattttatagagtgcgaatatcacggtggcgacagcgtttacgtg
cccgtgtcaaagttcaaacttctgcacagatatgtcgggaacgaagacggaacgcccaaa
attgacaaactgggctccgccgtctgggtaaaaaccgtgcgaggcgcaaaacaggcgact
gaaacggtagccagagagttgcttgaactttacgcaagcagaaagtccgatgacggacac
ggtttttccaagccggactcggagtttcgcgagtttgaaatgggttttatgtttgaagaa
acgcccgaccagaaaaaagccattgaagacgttatggaagatatggaatcgccgcgcccg
atggatcggctgatttgcggcgacaccggtttcggcaaaaccgaagtggctttaagggcg
gccgtaaaagccgttatggacggctttcaggtcgccttcatagcacccaccacgctgctt
gtggcgcaacatcttaaaaccgcgcggagccgtcttgaaaagtttcccgtgaacgcagcc
gcactttcaagattcaactctccgagtgagggaaaagctgttcttgaaggcatggagcgc
ggaactgcggacatcgtaattggaacacacaaacttctcggcaacaaaattaaattcaaa
aatctcggtcttctaataatagacgaagagcataaattcggtgtcaggcacaaggaaaaa
ctcaaaacgctgaaagcgaaccttgatgtgctttcgctgtcagcgactccaattccgcga
acgctccaactgtctctcacgggaataagggacataagcacaattcattcccctccgcac
gggaggctccccgtgaaaatacagattcagaaatgggacgctcccctcatacgcgacctt
gttgagtgggaaattgagcgcggcggcggcgtgttttttattcataacaggattgaaacc
atcgccacggtggcaaagggcctcaaagagatagttccgcatgtttcaaccgaggttact
cacggaagaatgggcaaaaaagaccttgaaacgaagattgaaaagttcgcgcgcggagac
gtggacatgttgataacaacctccatagtggagtccggactggacatcacaagagccaac
acaataatcataaatgacgcgcacaccttcggcatcgcggacctttaccaactcaagggg
cgcgtgggcagaggtagagaacaggcatacgcctgcctgctggtgcgcgacaaacacttg
ctcaccgaaaccgcgtggaaacgacttgaaaggtttgccgaactgtgggatttcggctcc
ggatatgaactcgctttctctgacatgcgaatgagaggagtgggaaacctgttcggtgta
gagcagtccgggcatgtcgccgctgtcggggttgagttctatcttgatatgttgcgcgag
gcggtggagaaactgaaaaccggcaagtcgcaccgcaaggttgagccggaaatcaaaaca
aaaattgaagcgcgcattcccgaagactatgtgaaaaacagcggtgagagacttgtgttt
tacaaaagaatttcatcggcggccacaatgagtgaggtcaaaaagattaaagatgaactc
acggaccgcttcggtcccgttccatgccgcctcgccaacttgctcgcgcttacagagctt
aaaacagtgcttaaaaaacactcggtcggctttatgaaaatagacgctgaaaacgcgggc
gcttacgcgacaaaagacggcacggacacgaaagcgctcttttccaaaacccggaacggc
tggaaaatacgctctctcggagggttgcccgaaccggccgccaaaagtgcggcgcggctc
ctgtcttctatcaaacaggtttag
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