Mycetomoellerius zeteki: 108723028
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Entry
108723028 CDS
T11078
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mzt Mycetomoellerius zeteki
Pathway
mzt03013
Nucleocytoplasmic transport
mzt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mzt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108723028 (Upf1)
03015 mRNA surveillance pathway
108723028 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mzt03019
]
108723028 (Upf1)
Enzymes [BR:
mzt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108723028 (Upf1)
5.6.2.5 RNA 5'-3' helicase
108723028 (Upf1)
Messenger RNA biogenesis [BR:
mzt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108723028 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
108723028 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
AAA_10
AAA_7
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
108723028
NCBI-ProteinID:
XP_018303981
UniProt:
A0A151X4G6
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDVTQTQSSQ
PVQVNGTNGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGF
IPAKADSVVVLLCRQPCAAQTSLKDMNWDQEQWKPLIEDRSFLSWLVKFPSEQEQLRARQ
ISAQQINKLEELWRGNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQSALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNMPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGVTVSA
RNKSGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacgggcctagcagccaaactctcacgttcctcgacaccgaggag
acagacctgatcggcgcggacactcagggtagcgagttcgacttcaccgacttcaccctc
ccgtcgccgagtcagacccaggcctcgcagcacgacgtcacccagacacagtccagtcaa
cccgttcaggttaatggaacaaatggtagctcgtcattggatttgaagatctctggagca
gcccagagtcttgctgaattgcaatttgaagaggaggaagaagaagcgtattacaatcgt
gatttacctgaccatgcatgtaaatactgcggtatccatgaagcatcctgtgtggttatg
tgcaacgtttgccggaaatggttctgtaatggacgcggcaatacgtcagggtctcacatt
atcaatcatcttgtccgtgctaaacacaaggaagtcactttacacagagatggtcctctt
ggagagactgttttggaatgttattcctgtgccacgagaaatgttttcgtattgggcttt
attcctgctaaagctgattccgtagtcgtattgctatgccgccaaccatgcgcggcccag
acttctttgaaagatatgaattgggatcaagaacaatggaagcctttgatcgaagatcgt
agctttttgtcttggttagtaaagtttccgtctgaacaagaacagttgagagctagacag
atctctgcgcaacagattaataaattggaagaattgtggcggggcaatgttgatgctact
ttccaagatttagaaaaacctggagtggacgaggaaccacagcaggttctattgcgctat
gaggatggatatcaatatcaaaatatttttggtccacttgtgaaattggaagccgattac
gataaacgtttgaaagaatctcaaactcaagagaatattgaagtacgatgggacgtagga
ttgaacaagaagactatcgcgtactttatgctggccaaaacggatggagatatgaaattg
atgcatggagatgaactgagacttcgttacctgggagaacttcacaagccttggtctggc
attggacacgtaattaagattcccgacaattacggggaggaagtcggaattgaactgaaa
aataattctggagcaccaacggaatgtattagcaactttgtcgttgactttatttggaag
agcacgagttttgatcgaatgcaatccgcgttacggaaatttgctgtggatgatacgtct
gtatcggcttacatatatcacagactattaggacacgaagtagaagaggtcctgtttcgt
tgtcatctccctaaacattttagtgcaccgaatctacctgatttgaatagatcacaagta
tatgctgtgaaacacgcgatacaacgacctttatctctaattcaaggaccacctggaaca
ggtaaaaccgtgacaagcgctactattgtatatcaattggtgaaacagaatggcggccca
gttctcgtatgcgctccttcaaataccgccgttgatcaattgaccgagaaaatacataaa
tcaaatttgaaagtcgtacgattgtgtgccaaatcacgagaggccatcgattcgccagtg
agtttcctcgcattgcataatcaaataaaaaacatggagacaaacaccgagttgcagaaa
ttacaacaactgaaagacgaaacaggcgaattgtcgagtgtcgacgagaagcgctataga
ctcttgaagaaagcggcggagaaagagcttctcgaagcggccgatgtaatttgttgcacc
tgcgtcggcgctggtgatccgagattgcacagattgaagttccattccatacttatcgac
gagagcatgcaggctactgagccagagtgcatggtaccagttgttctaggagcgaaacaa
ttaatcctcgttggagatcattgccaattaggcccggtggtgatgtgcaagaaagccgct
agagccggtttatctcagtctctgtttgaaagattggtagtgttgggaattaggccattc
cgcttggaagtacaatatcgtatgcatcctgatctctcgcgatttccgtctaatttcttc
tacgaaggttctctacagaatggtgtttgtgctgatgaaaggaaattattgaaaatcgac
tttccttggcctgcaccagacaaaccaatgtttttctatgtcacacaaggtcaagaagag
atagccggaagtgggacatcttacttaaatcgtaccgaagcatccaacgtggaaaagata
acgacacgattcttacgttgtggcgtgaaaccggaacagattggagtgataaccccttac
gaaggtcaacgagcttatctcgtacaatatatgcagtaccaaggttctctacactcgaaa
ttgtatcaagagattgaagtggcgagtgtggatgcttttcagggacgagaaaaggacatt
ataataatgtcctgtgtacgatccaacgaacatcagggcattggattcttgaacgatccc
agaagattgaacgtggcgttgactcgcgcaaaatatggcatcatcatcgtaggaaatccc
aaagtgctttcgaagcaaccgctctggaatcatttgcttagcttttacaaagagcagaag
gtgctggtcgaaggaccgttgaacaatttgaaggagtccatgattcaatttgctaagcca
aagaaactcgtgaacgcagccaatccaggctcgcactttatgtccacgtcgatgtacgat
gcgcgcgaagccctgatccccggatcggtgtacgatcgttctggcactcaagtgaatggc
acgcagaatcacaatccgtactaccaaagaaacgtgccgctcgacattttcagtcgtact
catgatactatcagctacatcagtccggaacgggcacaggcagcgatgaacaacatgccc
gtaccggttggtatgtttatgaacatggcacacgtcccaccgcgtttctacaatcagcat
caacaagcattacaagcacgccagaatcaaagaaaccgacgcggtgtcactgtttcagcg
aggaataaatcaggtccgcgtatgggtaaattgagtcaaaccgagcaaaacacacaaccg
tatagtcaaccgggtctgccattgacgcagggcacgactcaaggtatgtctcagcctggt
ttcagtctctcgcagcctggtctcagtcaagcagaactttctcaggactcgttcgcggtc
ggcgaattccaatcacagatggacggcctgttatcgcaggactcgacttaccaaggcgac
cgaagtggcttttatcagtcgggccagtcgcaagccggaggacagttctcacagccctac
tga
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