Mycetomoellerius zeteki: 108728540
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Entry
108728540 CDS
T11078
Symbol
Pcf11
Name
(RefSeq) uncharacterized protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mzt Mycetomoellerius zeteki
Pathway
mzt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mzt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108728540 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mzt03021
]
108728540 (Pcf11)
03019 Messenger RNA biogenesis [BR:
mzt03019
]
108728540 (Pcf11)
Transcription machinery [BR:
mzt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108728540 (Pcf11)
Messenger RNA biogenesis [BR:
mzt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108728540 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
HEAT_MROH2B_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
108728540
NCBI-ProteinID:
XP_018312633
LinkDB
All DBs
Position
Unknown
AA seq
1893 aa
AA seq
DB search
MFSSTKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHASAIVQAVETHLQKVRSD
IKLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPP
NKLFSLDVRVQSIDPAWPITAPPTSIPSGSIHVNPRFLSMPQQATTSIVQPVKLPPGEPV
TTTEAVMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKTEVVVSTA
HVAPTTETTTQAKPVAPVVPNQTSKQVAKQFPAAAASLLKNVGANSGPRIAPASSIAVAS
AKPVSRDPRLKPTSAIQDVIVPTIDPRQRPGTTSPKEARNESQTQQVANTIVTSNQLKQQ
PSKSAVTINKLPVNPGAGPDNTTLLNVMNNNNSDNNSNNKNFNSNINKDATSHRISQKKD
PRLNINSSANLNSNNSKNIQNLSVCSNNSSSVLSMGNRGSGGSDINKSKDSKSSNSRGSS
SLADKSSTSSKSSHRKLGNKSRSKQPQICPNKIPKVDRDSSPIRSKSREKDSEDSSPSSR
TSPQSFQASKSRKKNTKSRKRSPSPPYRIPRRNDAKSSSSLNSSGGVTEEEQSGSLIVSP
PHPPAFKEIRPNARQRNYVRRNKDDSLSPERSPVNAGNTQIAAEPTLESSSKDEDLRAPL
SLPGAAVSIPEKKEDLDLRVLPPVNTNKRRSEECVEATPPKKTKAEKFDALFGNEDVDLR
TLTHPNAGRPPTPPPPVISGEDGKDGWAKLKTPTKNDRDKQVNNTDDKRDRDRNRDRLGR
LRLYNKLPDDPKERRRTLSNDEQDSRPGRRGRENDKPERNDDRNIEIIMKQAAEQLNQGS
ITKMQYNTLIQEVLHMSEDRKLRAAQRKEKEAGTVIWEKGINMDISGPGDRAATFSPSND
KEMIRNKEHPMPRNPNGPRWQNQPWQQPWAHPPGPSYGGPQGHFNSDMRPVGPWQNPRHF
GPMRPDYQYHSGFNHNMGPNPRLGPGMMGPMGPNGPIMSNLLPNGPMGPMGPMPNPPMPM
GCHPAMMMNNGPMPNLITNMPPLTSGRNVSPNTSGKYDLEDNDHSYNNAVLKNPGSHSRE
LPPPDSKLLADIARDTMKSINIDNIPREIRYYGQTGVVFMNWDDPREIGFQDGIRRILID
EKDTITCAFNDQYKEFMYEGEVHRIKLGAPTRELYVDDCWYECYFGGMPITIELGGKKIS
VKLEGPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIEGKPHTLEFTDA
LQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRAGHIKITGMRGEGPIESPP
PAAPLLAQKPKLDAAPAPSQLPTVENESTSQDDTDFTSTSKPDLQLDILSSVLPSAMAPS
SGLSYQAEPVENPPAPTLPLNMSELFQRLVETGIVPNLTEQKKQEEEEKKESVITPVSFD
KPETLKIKQPAISTALYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDSARKAHS
RPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTAETEGMATDDSPQETLQPSVPTGSDED
SRCQVCHDAFEQFYNEEKEEWHLRPAVNYEDKNYHPLCLEDYKEKSSARALEKSALALEE
TVSEMEENKMECSEETPGDETKQEESDIEMSKKEQLESTENLNQVEMNMQQLLDSIVASE
KKEESVDVENSEVPQDDTEEKKENVESVNEESTEAVIEGAEQDAPTINKEDESPGEGVTI
PFENIKIKEEPLDDVDEQIDSEVFDFANVEVKEEPMEPEPDPEQIVSESSTVDTTYAAVK
SSIDGNVELDSTPPAIPAAPSRIKINITKPLNINKEPEENKEKDKVAVETSAEEKAEQPL
VAASIKPSLQGRKLSILPPVEKGQELSGLCSIM
NT seq
5682 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgtcgacaaagtccaaagaagttgcagatgagtacatctcatctctatctgat
cttactattaacagtaagccgcttatcaacatgctcaccatgctggctgaagataatatc
gaacatgcatcagcgatagtgcaagctgtcgagactcatctacaaaaggtgagaagtgac
atcaagttacctgttctctatctcatcgactcgattgtcaagaatgtgaatggagactat
ttgaatctcttcacgcagaacatagtaaacacattctgtggggtatttgagaaggttgat
gaaaatacaagagctagcatgtggaagttgcggcaaacgtggaatgatgtatttccacca
aataagctattttcattagatgtacgggtgcaaagtatcgatcctgcatggccaatcact
gccccacctactagtattccttcaggatctatacatgtcaatccaagatttctttcaatg
cctcaacaagccacaacatcaatcgttcagcccgttaaattgccaccaggagaaccggta
acaacaacagaagcagtcatgagagaacagctgctgaagaagcagcgagaattgttagaa
ttacaaaagaaaaaaatcgagttagaactgttgcaagctaaagcaagtttagagcaacag
cagaggcaacttgacaaacaagctggaagcttgaaaacggaagtggttgtgtccactgca
catgttgcgccaactacggagacaacaacgcaagcgaaacctgtcgcacctgtagtgcca
aatcaaacttcaaaacaagtagcaaaacaatttccagcagcggcagcgtcacttttgaag
aacgtaggagcaaacagtggtccacgaattgcaccagccagtagtatagcagtagcatca
gcgaagccagtctcgcgagatccacgtttgaagcctacttctgctattcaggatgtgata
gtgccaacgatagatccacgacaacgaccgggtacgaccagtccgaaagaagcgcggaac
gaaagtcaaacgcagcaagtggcaaatacaattgtaacttcaaaccaattaaaacaacaa
ccttcgaaatcggctgtaactatcaacaagcttccggtcaatcccggcgccggacctgat
aatacaacgttattaaacgttatgaataacaataattctgataataatagcaataataaa
aattttaatagtaatataaataaagatgctacctcgcatcgcataagtcaaaagaaagat
cctagattaaatattaatagtagtgctaacctaaacagtaacaactccaagaacattcag
aatttatcggtttgcagtaataactcgtcttcagtattatcaatgggaaatcgaggaagt
ggaggtagtgacatcaacaagtcaaaagattcgaagagctcaaattcgcgcggctcttcc
tctttggctgacaagtcttccacttcctccaaatcttcgcataggaaattaggcaataag
tcgcgatctaaacagcctcagatatgtccgaataagattccgaaagtcgacagagactcg
agtccgattaggtcaaaatctcgtgaaaaagacagcgaagacagttcaccgtcctcacgt
acctctccacaatccttccaagcctctaaaagccgtaagaagaacacaaaatcgagaaag
cgtagtccaagtcctccgtatagaatccccaggcgtaacgacgcgaaatcgagctcgagc
ttgaatagttccggtggtgttactgaggaggagcaatctggttcgttaatagtatctcct
cctcatccacccgcattcaaagagatcagaccgaacgctagacagagaaattatgtaaga
cgaaataaagacgacagtcttagtccggaacgttctccggtcaatgctggaaatactcaa
atcgcagccgagccaacattggaatcttctagcaaagacgaagatctcagggcaccacta
tctctacctggagccgctgtttctatacccgaaaagaaagaagatttagatctacgagtc
ttaccacctgttaacactaacaaaagacgcagtgaagagtgtgtcgaggcgaccccaccg
aagaaaactaaggctgaaaagtttgacgcattatttggtaatgaagacgtggatttgcgc
actttgacgcatcctaatgccggtcgacctccgacacctccaccgcctgtgatttccggg
gaggatggaaaagatggttgggcgaagttaaagacacccacgaaaaatgatagagataag
caagttaataatactgacgataagcgcgaccgagatcgtaatagagataggttgggacgt
ctcagactctataacaaacttccggacgatcctaaagagagaagaagaacgttatcgaac
gacgaacaggattccagaccaggacgcagaggccgggagaatgataaacctgagagaaat
gacgatagaaatattgagataataatgaaacaagctgctgaacaattgaatcagggatcg
attacgaaaatgcagtacaataccttgatacaagaggtgttacacatgagcgaagatcga
aaattacgagctgcacagcgtaaggaaaaggaggctggcacagtgatatgggaaaagggt
attaatatggatatatctggtcccggagatcgcgccgcgacgttcagcccgtccaatgat
aaggaaatgatacgaaacaaggaacacccaatgccacgaaatccgaatggtccaagatgg
cagaatcagccgtggcaacaaccttgggcgcatccgccgggaccatcgtacggtggcccg
cagggacacttcaattcggatatgagacctgtcggtccttggcagaatccgcgacacttc
gggccaatgcgaccggattaccagtatcatagcggttttaatcacaatatgggtcccaac
ccgcgcttaggacctggtatgatgggtccaatgggtccaaatgggccgatcatgtcgaat
cttttgccgaatggtccaatgggaccaatgggacctatgccaaaccctcctatgccgatg
ggatgtcatcctgcaatgatgatgaataacggacctatgcctaatcttattacgaatatg
ccaccattaacgtctggtagaaacgtatcaccgaacacatctggcaagtatgatctcgag
gataatgatcatagttacaataacgcagtgttaaagaatccgggctcgcatagtcgcgaa
ttgccgccgccagattcaaaactattggctgacatcgcgagagacactatgaagtctata
aatattgacaatataccgcgggagattcgttattacggacaaaccggtgtggtgtttatg
aactgggacgatccacgggagatcggtttccaggacggtataagaagaatattgattgac
gagaaagacactataacttgtgcatttaatgatcaatataaggagtttatgtatgaagga
gaagtacacagaatcaaacttggagcacctactcgagaattgtatgttgacgattgttgg
tatgagtgttactttggtggtatgccaataacaatcgaactcggcggcaagaaaatcagt
gtaaagttagagggtcctcctccacaagtcaaaatcggcactgtaaagcgaacggatctc
gtggttgcgaaaattaatcttattattaacgcgcgaaatatggtgccggtatttttagat
gcaaaaccacagatattcgaaatcgagggaaaacctcatactctagaatttacagatgca
ttacagacagttctgttaaatggacgaccgtttaaagtcgaatttggagggttgcctaaa
cctattattgttagagacaagaagcatttcattagattttcggtattgcctagaggagta
cgtgctggtcatattaaaattaccggaatgagaggtgaaggtcctatcgagtcgccgcca
ccggcggcgcctttgctggctcaaaaaccgaaattagacgctgctcctgcgccaagtcaa
ttgcccactgtagaaaatgaatccacgtcgcaagatgatacagattttacttctacttca
aaaccagacctgcaattagatatcttatcatcagttttgccatcagcgatggcaccgtca
tccggtttgtcatatcaagccgaacctgtagaaaatccgccagcaccgacgttgccactg
aatatgagcgaattattccaaagattggtcgagactggtatcgttccaaatctcacagaa
caaaagaaacaggaggaagaagagaagaaagaatctgtgattactccagtttccttcgat
aaaccggaaactcttaaaattaaacaaccagcaatttcaacagcgttgtacagtggtatg
caatgtagttcttgtggcgctagattcgcacctgagttagctactcggtacagccaccat
ctggattggcacttcagacagaacaggcgtgaacgtgactctgcgagaaaagcgcattct
cgaccatggtattatgatgtcagcgattggatacagttcgaggagatcgaagatttggag
gacagagcacaaagctggttcgagactgagaaacagacagcggaaacggaaggtatggct
actgatgattcgcctcaggaaacattgcagcctagcgtaccaactggcagcgatgaggat
tcgcgatgccaagtatgtcatgacgcatttgagcaattctataatgaagaaaaggaggaa
tggcatttgagaccagcggttaattacgaggacaagaattaccatccgctctgtttagag
gattacaaggaaaaaagttcagcgagagcattagagaagtcagctttggcgcttgaagag
accgtttctgaaatggaagaaaataaaatggaatgttccgaagaaacgcccggagatgaa
actaagcaggaagagtctgacatagaaatgtcgaaaaaagaacaactcgagtctacggag
aatttgaatcaagtagagatgaacatgcagcaactcttagactctattgttgcatcagag
aaaaaagaagagtccgttgatgtggaaaattccgaagttccgcaggacgatacggaggaa
aaaaaagaaaacgtagaaagcgtcaacgaagagagtacagaagctgtcatagaaggtgcc
gagcaagacgcacctacgataaataaagaagatgaatctccgggcgaaggtgtaacaata
ccttttgagaatattaaaattaaagaggaaccactagatgacgttgatgaacaaatcgac
agcgaagtgtttgatttcgccaacgtggaagtcaaagaggaacctatggagcctgaacca
gatcccgaacaaattgtaagtgaatcgagcacggtcgatacaacatacgccgcagtgaaa
agttccatcgacggaaacgtggaattggattccacaccgccagctattcccgcggctcca
tcgcgaattaagattaatattactaagccgttgaacattaacaaagagccagaggaaaat
aaagagaaggacaaagtagcggttgagacatcagcagaggaaaaggcagaacaaccatta
gtggcagcttctattaagccgagtctacagggtaggaaactatcgatcttacctcctgta
gaaaaagggcaagaattatcgggactttgttctattatgtaa
DBGET
integrated database retrieval system
