Candidatus Nanopelagicus abundans: B1sIIB91_02305
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Entry
B1sIIB91_02305 CDS
T05091
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nab
Candidatus Nanopelagicus abundans
Brite
KEGG Orthology (KO) [BR:
nab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nab03016
]
B1sIIB91_02305
Enzymes [BR:
nab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
B1sIIB91_02305
Transfer RNA biogenesis [BR:
nab03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B1sIIB91_02305
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ASY23753
UniProt:
A0A249L3X8
LinkDB
All DBs
Position
complement(441200..442483)
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AA seq
427 aa
AA seq
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MSTPLLVPRNAMSTLVEDESSFEELINQLALGNGPIAIDAERASGYRYSQRAYLIQIYRK
DGGLHLIDPIPLKDSKLWKKFNKQFSSCEWVIHASTQDLPCLIEVGLKPTLLFDTELGAR
IAGCERVGLGALAESLLELTLAKEHSAVDWSIRPLKPEWITYAALDVDILLDIRNAVENL
LTEQKKLKWAQQDFTSILKNYKDYKFSDQPKADRWRRTSGMHKVRDRLTMTIVRDLWLAR
DEIARQIDLAPGRVLGDLAIIELAIIRPDNLEAVAKVISWRTKLESPPFNTWLKVLTDSP
KTPLDQQPEFRVASENLPPMKIWKEKNPLGYARLTHARAALIELSKQIQIPTENLVTPEL
VKKICWQQPPSSSSEYESFVITQLTQMGARPWQIEQVSPVIAAKLDAIEPVVVVEPPAGE
SEAEASA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccccacttctagtaccccgtaatgctatgtctactcttgtagaagatgaaagt
agctttgaagaattaattaatcaattagccctgggtaatggcccaattgcaattgatgcc
gaacgtgcatctggctatcgatatagccagcgagcttatttaattcagatttatcgcaaa
gacggtggattacatttaatagatccaatccccctaaaagattcaaaattatggaaaaaa
tttaataaacagttttcaagttgtgagtgggtaattcatgccagtactcaagatttgcca
tgcctaattgaggttggtttaaagccaacactgctatttgatactgaattaggggcacga
attgcaggttgtgaaagagttggcttaggagcactagcagaaagtttattagaactaact
cttgctaaagagcattcagctgttgattggtctattcgcccattaaagcctgaatggatt
acctatgccgctctcgatgttgatattttacttgatattcgaaatgcagttgagaactta
cttactgagcaaaaaaaattaaagtgggcccagcaggatttcacatcaatattaaagaac
tataaagattacaaattctcagatcaaccaaaggctgatcgatggcggcgcacctctggt
atgcataaggttcgagatagattgacgatgacaattgttagagatttatggctagcccga
gatgaaatagctaggcaaatagatctagcacccggtcgagtattaggagatttagcaatt
attgaacttgcaataattaggccagataatcttgaagctgttgctaaggtaattagctgg
cgcactaaattagaatcaccgccatttaatacctggcttaaggttttaactgactcacca
aagacgccccttgatcaacaacctgaatttcgagttgcttcagagaatttaccgccaatg
aagatttggaaggaaaagaacccacttggatatgccaggttaactcacgctagagcagcg
ctaattgagttatcaaaacaaattcaaatccctactgaaaacctagtaactcctgaattg
gtaaaaaagatatgctggcagcaaccaccttctagtagcagtgaatatgaaagctttgtg
attacccaattaactcaaatgggagcacgcccctggcagattgaacaggttagccctgta
atagcggctaaattagatgcgattgagccggtggtagttgttgagcccccggcgggcgaa
tctgaggctgaagcgagcgcgtaa
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