Candidatus Nanopelagicus abundans: B1sIIB91_05060
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Entry
B1sIIB91_05060 CDS
T05091
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nab
Candidatus Nanopelagicus abundans
Pathway
nab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1sIIB91_05060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nab03400
]
B1sIIB91_05060
Enzymes [BR:
nab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1sIIB91_05060
DNA repair and recombination proteins [BR:
nab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B1sIIB91_05060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASY24255
UniProt:
A0A249L5P7
LinkDB
All DBs
Position
complement(982607..986095)
Genome browser
AA seq
1162 aa
AA seq
DB search
MLNLLSKLKSPIGNYLATSVDMVAPASIHCLLAANSPAPLLIVTTSSRTSQELNAEICSL
IGSENVVNFPAWETLPHERLSPKADTVTLRFKALNQIVSKDIKIITCSIRALLQPIIANN
LELSQIKISVNQQLVMFDLIRQLSQFGFTRSDLVERRGDFAVRGGILDLFPADQEHPIRI
DFFGDEIEEISYFAVADQRSLTKITGEIKIYPCRELLLDEKVKENAKKLGKTFPEISDMT
EKIIQGITFEGMESLAAGLVDEFKTIIDYLPKQTQIWFVDEPRLRSRAADLITTNEEFLA
ASWSNIAWSENEKLSPPLDLTAQLGMGGFNELVRIEQIANKAGLEIRNLNLYSSTPEQEE
ITFIDVVSSYGKKYENALSDIKSWQKSGFQVIFTAAANGTLKRFSELLNSSDLANEIIEV
DKESSQTNLIYLYRSDITHGFISEKYKLVLITDKDISGQRSTDKDLARMPSRRKKAIDPM
QLKSGDYVVHEQHGVGRYVELINRNINNISREYLVIEYASSKRGQPADKLFVPTDTLEQV
TKYVGGESPALHRIGGADWQSSKRKARKAIKQIAAELIRLYAARMSAPGFAFSADTPWQK
ELEDSFAFVETIDQQATIDEVKRDMEKPNPMDRIVCGDVGYGKTEIAVRAAFKAVQDGKQ
VAVLVPTTLLVQQHFNTFTNRYASFPVKIAALSRFNTANESKLIIAGLKDGSVDVVIGTH
RLLSKDIKFADLGLLVVDEEQRFGVEHKEELKKARTNVDVLAMSATPIPRTLEMAITGIR
EMSNITTPPEERHPVLTYVGAYDDKQVAAAIHRELLRDGQIFFIHNRVESIEAVAQRIRK
LVPEVKIGIAHGQMNERLLEDVILDFWNREFDLLLCTTIIESGIDIPNANTLIVDRSDLF
GLSQLHQLRGRVGRSRERAYAYFFYPTDQPITELAHDRLTTIATNTDLGAGMAVALKDLE
IRGAGNLLGGEQSGHIAEVGFDLYMRMVADAVDEFKSGYFEDKPKNTDCKVELPINAHLP
VSYIESERLRLDLYRRLAEASDDDGLNEINIEMTDRFGPLPQPALELLAVASLRLFAKSL
GLTDIAFSGKNLRLTPVVLAESAAIKLNRLYPGSIYKNASQILLVARPSSPNWIESEEIG
DTSTLAWVKSVLANLIKPATTK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatctattatccaaactgaagtcaccaattggaaattatttagcaacatcagtg
gatatggtggcacctgcaagtattcactgcctacttgccgctaactcgcctgcgccacta
ttaattgttactacatcaagtagaacatcacaggaattaaatgctgagatctgttcacta
attggtagtgaaaatgttgttaactttccagcctgggagacattaccgcacgagcgatta
agtcctaaggcagataccgttactttaagatttaaagcacttaatcaaatcgttagtaaa
gatataaaaattattacctgttcaattagagcattactacaaccaattattgctaataac
ctagaactttctcaaataaaaataagtgttaatcaacagttagtaatgtttgatctaatt
aggcagctatcgcaatttggttttactagatcagatttagttgagcggcgaggtgatttt
gcagtcagaggtgggattttagatttatttccggcagatcaagagcacccgattcgaata
gatttctttggtgatgaaattgaggagatctcatattttgcagtagctgatcagagatct
ttaacaaaaattaccggtgaaataaaaatttatccatgccgagaacttcttctagatgag
aaggttaaggagaatgctaaaaaattaggaaagacttttccagaaattagtgatatgact
gaaaagatcatccaaggaataacatttgaaggaatggaatctctcgccgccggcttagtt
gatgagtttaaaacaatcattgattacctacctaaacaaactcagatttggtttgtagat
gagccaagacttagaagtcgggccgcagatttaattactaccaacgaagagtttctagct
gctagttggtcaaatattgcctggagtgaaaatgagaaactctcaccaccccttgattta
actgcgcaacttggtatgggtggatttaatgaattagtaagaattgagcagattgcaaac
aaggctgggcttgaaatacggaatttaaatctatattccagcacgccagagcaggaagaa
atcacatttattgatgtggttagtagctacggaaaaaagtatgaaaatgcactctctgat
attaaaagctggcaaaaaagtggctttcaagtcatttttaccgctgctgccaatggcaca
ttaaagcgatttagtgaattactaaattcttccgatttagcaaatgaaataattgaagtt
gataaagaatctagccaaactaacttaatttatttatatcgctctgatattactcatggc
tttatcagtgaaaaatataaattggttttaattacagataaagatatatctggacaaaga
tcaacagataaagatttagcccgaatgccttctaggcgtaagaaggcgattgatccaatg
caacttaaatctggtgattatgtggtccatgaacaacatggagttggtaggtatgtagag
ctaattaatcgaaatattaataatatttctagagaatatttagtaattgagtacgcatca
tcaaaacggggtcaaccggctgataaattatttgttccaactgatactttagaacaggta
acaaagtatgttggtggtgaatcaccagcattacaccgaatcggtggcgctgattggcaa
agcagtaaacgcaaagcgcgtaaagcaattaaacaaatagcagcagagttgattagatta
tatgccgcacgtatgagtgcgccaggttttgcattttcagccgatacaccttggcaaaaa
gagctagaagatagttttgcttttgttgaaacaattgatcaacaggcaactatcgatgaa
gtaaagcgggatatggaaaaaccaaatccaatggatcgaattgtttgcggtgatgttggt
tatggaaaaactgagattgcagtaagggcggcatttaaagcggttcaagatggtaagcag
gtagcggtattagttccaaccacattacttgttcagcaacacttcaatacatttacaaat
cgttatgccagctttccggtaaagattgctgctttatctagatttaatacagcaaatgaa
agtaaattaattattgcaggacttaaagatggctcagttgatgtagtaattggaactcat
cggcttttatctaaagatataaagtttgccgatcttggcttattagttgttgatgaggag
caaagatttggagttgagcataaagaagagctaaagaaagcaagaacaaatgtagatgtt
ttagctatgtcagctactccaattcctagaactcttgagatggcaataactggaattaga
gagatgtctaacatcaccacaccaccggaggagcgacatccagtcctaacatatgttgga
gcatacgatgataaacaagttgcagcggcaattcatcgagagttactaagagatggacag
atattttttatccataatcgagttgaaagtattgaagctgtcgcgcagcgaattagaaaa
ttagtgcccgaggtaaaaattggtattgcccacggacaaatgaatgagcggttacttgag
gacgttattttagatttttggaacagggagtttgatttacttttgtgcacaacaataatt
gaaagtggtatcgatattccaaatgctaacaccttaattgttgatcgatcagatttattt
ggtttatctcaactccatcaattacgtggtcgagttggcagaagtagagagagagcatat
gcctactttttttacccaactgatcaaccaattacggaactagcccatgaccgcttaacc
acaattgcaaccaacactgatttaggcgctggtatggcggtggcattaaaagatttagag
attagaggtgctggaaatctattaggtggtgaacaatctggtcatattgctgaggttggt
tttgatttatatatgcgaatggttgctgacgcagttgatgaatttaagagtggttacttt
gaagataaaccaaaaaataccgattgcaaagttgagttaccaattaatgcccacttacca
gtttcatacattgaatctgagcgattacgacttgatctctatcgcagacttgctgaagca
tcagatgatgatggcctaaatgaaataaatattgagatgaccgacagatttggcccacta
ccccaacctgctcttgaattattagcagttgcctcactgagattatttgcaaaaagtcta
gggctaactgatattgcattttctggaaaaaatcttcgactaaccccagttgtcctagcg
gaatctgctgcgataaaactaaatcggctatacccaggatctatatataaaaatgcatca
caaatcctgctagtcgcaaggccaagcagccccaattggatagaaagtgaagagataggg
gatacttcaacccttgcctgggttaaatcagtcctagctaatttaattaagccagctact
accaaataa
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integrated database retrieval system
