Nanohaloarchaea archaeon SG9: AQV86_00410
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Entry
AQV86_00410 CDS
T04498
Name
(GenBank) tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nac
Nanohaloarchaea archaeon SG9
Brite
KEGG Orthology (KO) [BR:
nac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nac03016
]
AQV86_00410
Enzymes [BR:
nac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AQV86_00410
Transfer RNA biogenesis [BR:
nac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AQV86_00410
Prokaryotic type
tRNA splicing ligases
AQV86_00410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AOV94370
LinkDB
All DBs
Position
complement(59333..60751)
Genome browser
AA seq
472 aa
AA seq
DB search
MELNKVSENIYEIPKEGKMKKPARIYANEELLEEIKGDDTLEQIKNVATLPGLQKHSIVM
PDGHQGYGFPIGGVAAIDMENGVISPGGIGYDINCGVRVLKTSLKYDDIKGKEEQIANIL
FDKVPCGLGKGGYIDVDKEDLEEILEKGAEWMLQNGHAKESDLKRCEENGRLPGKPEKVP
EDAKKRGLKQVGSLGSGNHFLEVQKVEETFEEEKAKAFGLEKNQIVIMIHSGSRGLGHQT
CTEYLRDFEKEYTETVDQLPDKELIYAPIGDELADDYRYAMYAAANFAWANRQAITEAIR
HSMERLFEEFDSELLYDVCHNIAKEETYEVDGEDKELLVHRKGATRAMPAGREEVPEVYS
EVGQPVLIPGSMGTSSYILSGGKNSPGLSFGSTAHGAGRLKSRTQAKQDYWGGDVQDDLK
REGIYVKAASGSTIAEEAPGSYKDVDEVIKISDELGIGEKVARLRPVVNIKG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggaactcaacaaagtatccgaaaatatctacgagatcccgaaagaaggaaagatgaag
aaacctgccaggatctacgcaaacgaagaactgctggaagagatcaaaggagacgataca
ctagaacagatcaaaaacgtggcaaccctgccaggcctccagaaacactcgatcgtcatg
cccgacggacaccagggctacggcttcccaatcggaggagtcgcagccatagacatggaa
aacggcgtaataagtcctggaggaatcggctacgacataaactgtggcgtacgagtcctc
aaaacctcgctcaaatacgacgatatcaagggaaaagaggaacaaatcgcaaatatcctc
ttcgacaaagtaccgtgcggactcggcaaaggaggctacatcgacgtcgataaagaagat
cttgaagaaattcttgaaaaaggagctgaatggatgctgcaaaacggccacgccaaggaa
agcgatctcaaaagatgcgaggaaaatgggaggcttccaggaaagccagaaaaagtcccg
gaagacgctaaaaagagaggcctcaaacaggtcggaagcctcggatcaggaaaccacttc
ctcgaagtacagaaagtagaagaaaccttcgaagaggaaaaagccaaggccttcggtctt
gaaaaaaaccagatcgtgataatgatacattccgggagtagaggcctcggacaccagaca
tgtactgaatacctgagagacttcgagaaagaatacactgaaaccgtggaccaacttcct
gataaagaattgatctatgctcctatcggagacgaactggcggatgactaccgttatgcg
atgtacgctgctgcaaactttgcatgggcaaacagacaggcgatcacagaagctatcaga
cactccatggaacgcctgttcgaagagtttgattcagaacttctctacgacgtctgccac
aacatcgctaaagaggaaacctacgaagtagacggagaagacaaagaactgcttgtacac
aggaaaggcgcgacaagagcaatgccagcaggaagagaagaagtccccgaagtttactct
gaagtcggccagccagtactcatccctggaagcatgggaacctccagctacatcctctcc
ggcggaaaaaactctccaggcctttccttcggatctacagcccacggcgcaggaagacta
aagtcaagaacacaggcgaaacaggattactggggcggagacgtccaggacgacctgaaa
cgtgaaggaatctacgtcaaagcggcttcaggctcgacgatcgcagaagaagcaccaggc
agctacaaagacgtagacgaagtcatcaaaatttccgacgaactcggtatcggcgagaaa
gtcgcccgtttgaggcctgtagtgaatatcaagggctaa
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