Nisaea acidiphila: NUH88_02840
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Entry
NUH88_02840 CDS
T08369
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
naci
Nisaea acidiphila
Pathway
naci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
naci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NUH88_02840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naci03019
]
NUH88_02840
Enzymes [BR:
naci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NUH88_02840
Messenger RNA biogenesis [BR:
naci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NUH88_02840
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UUX50638
UniProt:
A0A9J7AU59
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All DBs
Position
580086..581477
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AA seq
463 aa
AA seq
DB search
MTCKTFSELALCEPLLRSLQDAGFETPTPIQQQSIPLVLDRRDLLAIAQTGTGKTAAFSL
PILQHLWESDKDGRRRLPAKTVRVLILAPTRELAVQIGENIATFTRHLKMKQVVIVGGVS
FGPQRAALGRGADVLVATPGRLLDLVQQNAVILDAVSHLVLDEADRMLDMGFVHDVRKIA
RLVPEARQTLLFSATMPPKVEQLAQFLLDEPARVEVTPEVVTVDRIKQTVHHVEAPAKKN
LLLQVMSDPDYAKVIIFTRTKHKADRISKMLTASGIESEALHGNKTQSARQRALGRFKQG
AVRALVATDIAARGIDVSDISHVINFELPNEPESYVHRIGRTARAGTDGSALSLCAPDEF
AYLKDIERLIGQRIEVVGGTAPEGSAANDGGQPKNGRGNGARKSRGRKRNGKPFAKGPSD
KPPQQQQRAPKGKPQNNKTRPQKPAAGGDGKLRRKSRDRREAA
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
gtgacttgtaagactttctccgagctcgccctgtgcgagccgctcctgcgttccctacag
gacgcagggttcgaaaccccgacccccattcagcagcaatccattcccctggttctcgat
cggcgcgacctgctcgcgatcgcccagaccgggaccggcaagactgcagccttctcgctg
ccgatcctgcagcatctctgggaaagcgataaggatggccgcaggcgcctgcctgcgaag
acggtccgggtattgattctggccccaacccgcgaactcgccgttcagatcggcgagaat
atcgcgacctttacccgccacctgaagatgaaacaggtcgtcatcgtcggcggcgtcagc
ttcggcccgcaacgcgcggccctcggccgcggcgccgatgtgctcgttgcaacccccggc
cgccttctcgacctcgtgcagcagaacgccgtcattcttgacgcggtctctcacctcgtg
ctcgacgaggctgaccggatgctcgatatgggcttcgtccacgatgtccggaagatcgcc
cggctggttcccgaggcgcggcagaccctgctcttctcggccacaatgccgccgaaggtt
gaacagcttgcccagttcctgctcgatgagccggcacgggtcgaagtgaccccggaagtg
gtgacggtcgaccgcatcaagcaaacagtccaccatgtcgaggcgccggcgaaaaagaac
ctgctgctgcaggtcatgtcggacccggattatgccaaggtgatcatcttcacccggacc
aagcacaaggcggaccggatctcgaagatgctgaccgcctccggcatcgagtccgaggct
ctgcacggcaacaagacccagagcgcccgccagcgcgcgctcggccgcttcaagcagggt
gcggtccgtgcccttgtcgcgaccgatatcgcggcccgcggcatcgatgtcagcgacatc
tcccacgtgatcaatttcgagctcccgaacgagccggaaagctacgtccaccggatcggc
cggacggcgcgggccggcaccgacggcagtgcgctctcgctctgcgcgccggacgagttc
gcgtatctgaaggatatcgaacgtctgatcgggcagcgcatcgaggttgtgggcggcacc
gcaccggaaggctcggccgcgaacgatggcggccagccgaaaaacggccgaggaaacggc
gcccgcaagagtcgcggtcgcaaacggaatggaaagccgttcgcaaagggtccttcggac
aagccgccgcaacagcagcagcgcgcaccgaaaggcaagccgcaaaacaacaagacacgg
ccgcagaaaccggctgccggaggagacgggaagctccgccggaagtccagggatcgccgc
gaggccgcgtag
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