Nisaea acidiphila: NUH88_04350
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Entry
NUH88_04350 CDS
T08369
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
naci
Nisaea acidiphila
Pathway
naci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
naci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NUH88_04350 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naci03019
]
NUH88_04350 (rnr)
03016 Transfer RNA biogenesis [BR:
naci03016
]
NUH88_04350 (rnr)
Enzymes [BR:
naci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NUH88_04350 (rnr)
Messenger RNA biogenesis [BR:
naci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NUH88_04350 (rnr)
Transfer RNA biogenesis [BR:
naci03016
]
Prokaryotic type
tRNA degradation factors
NUH88_04350 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UUX50924
UniProt:
A0A9J7AXF0
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All DBs
Position
927505..929769
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AA seq
754 aa
AA seq
DB search
MAAHKKPHGLPSREAVLEFINDSPTPVGRREIARAFNIKGADRIPLKAMLKDLAAEGAID
LGRGRRAAAPGSLPEITVVAITGIDEDGHASARPLSWREEGEPPAISIPPSTRAPSVGAG
DRALVKLERIDQGKYRGRIMRKLDSRGERVVGQLKREGKGFRILPADRRARGDYVVEPGE
TADAKPGELVIADVLPRGRMGLRHARVVEVLGDAGAPRAVSLIAIAEHEIPSVFPEACIG
QAEAAKPVTLGKRTDLRKIPLVTIDGSDARDFDDAVHAVADEDPKNPGGFRILVAIADVA
HYVRPGDTLDIEAHRRGNSVYFPDRVVPMLPEALSNGLCSLRPNEDRACLAVEMVINARG
QKVRHKFMRGLMRSEARLTYEQVQAAADGAPDTDIVPDGVIEPLYGAFRLLLSAREERGA
LDLDLPERKVVLGDDGKVASIEPRQRLDSHRLIEEFMVLANVAAAETLEAKRRPCMYRVH
ETPDPEKIDALKEYLEGLELAFGTSGVIRPKSFNELLAKVRGGPHETIVNELVLRSQSQA
VYSPDNLGHFGLGLRRYAHFTSPIRRYSDLLVHRALIDAHGFGKDGLGEIDLQDFNETAE
HISMTERRAAAAERSAISRYVAAYLTDQVGNTFEARVSGVGSAGLFVALAGIGADGLLPM
KRLPGDFYDLDDHRHSLSGRATGLTFKIGDPVTVRLVDADPLTGGVLLDYISGGTEGQPG
GQRRGRRAGGYRKHRGRHKHGQSGSARGRPKKSR
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
gtggccgcccacaagaagccccacggcctgccaagccgggaggctgtcctcgaattcatc
aatgacagcccgaccccggtcggacgccgggagatcgcgcgcgccttcaacatcaagggc
gccgaccggattccgctgaaggcgatgctgaaggatctcgccgccgagggcgcgatcgat
ctcgggcgggggcggcgggccgccgcgccgggcagtctgcccgaaatcaccgttgtggcc
atcaccggcatcgacgaggacgggcatgcgagcgcccgcccgctctcctggcgcgaggag
ggcgagccgcccgccatttccatcccgccctccacccgcgcgccgtccgtcggcgcgggc
gaccgtgcgctggtgaaactcgagcggattgatcagggcaaatatcgcggccgcatcatg
cgcaagctcgacagccgcggcgaacgggtcgtcgggcaactgaaacgcgagggcaaggga
ttccggatcctcccggcggaccggcgggcgcgcggcgactatgtggtcgagcccggcgag
acagcggatgccaaaccgggcgaactggtcatcgccgacgtcttgccgcgcggccgcatg
ggactgcggcatgcccgcgtggtcgaggtgctgggcgatgccggagccccccgggcggtc
agcctgatcgccatcgcggagcacgagatcccctcggtcttcccggaggcctgcatcggc
caagcggaggcggcgaaaccggtcacgctcgggaaacggacagatctccggaaaatcccg
ctggtgacgatcgacggcagcgatgcgcgcgatttcgacgacgccgtccacgccgtcgca
gacgaggacccgaagaaccccggcggcttccgcatcctggtcgcgatcgccgatgtcgcg
cattacgtccggcccggcgacaccctcgacatcgaggcgcacaggcgcggcaactcggtt
tatttccccgaccgcgtggtgccgatgctgccggaggcactgtcgaacgggctctgctcg
ctccgtccgaacgaggaccgggcctgtctcgcggtcgagatggttatcaatgcccgcggc
cagaaggtgcggcacaagttcatgcgcggcctgatgcgctccgaggcgcgtttgacctac
gaacaggttcaggccgccgccgacggcgcccccgacacggatatcgtcccggacggggtg
atcgaaccgctctatggcgccttccgtctgctgctctccgcccgcgaggagcgcggcgcg
ctcgacctcgatctgccggagcgcaaagtcgtgctgggcgacgacggcaaggtggcctcg
atcgaaccgcgccagcgcctagacagccatcggctgatcgaggagttcatggtgctggcg
aacgtcgccgccgccgagacgctggaagccaagcgccggccgtgcatgtaccgggtgcac
gagacgccggatccggaaaagatcgacgctctgaaggagtatctcgagggcctggagctc
gccttcggcacatccggcgtgatccggccgaaaagcttcaacgagctgctcgccaaggtc
cgcggcggaccgcacgagacgatcgtcaacgaactggtgctgcgcagccagagtcaggcc
gtctacagccccgacaatctcggtcatttcggcctcggcctccggcgctacgcccacttc
acgtcgccgatccggcgatactcggacctgctggtacaccgcgcgcttatcgacgcgcac
ggcttcggcaaggacgggcttggcgagatcgatctgcaggacttcaacgagaccgcagaa
catatctccatgaccgagcgccgggcggcggcggcggaacgttccgccatctcgcgctat
gtcgcggcctaccttacggatcaggtcggcaacacattcgaggcccgggtgtccggcgtc
ggctccgccggacttttcgtggctctcgctgggatcggcgccgacggcttgctgccgatg
aagcggctacccggcgatttctacgacctcgacgatcaccgccattccctcagcggacgg
gcaacgggtctgaccttcaagatcggcgacccggtcaccgtccgccttgtcgatgccgat
cctctgaccggcggcgtattgctcgattacatttcgggcggcaccgaggggcaacctggc
ggtcagcgccggggccgccgggccggtggatatcgcaagcatcgcggccggcacaagcac
ggccagtcggggagcgctcgggggcgcccgaagaagtcccgctga
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