Nisaea acidiphila: NUH88_14695
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Entry
NUH88_14695 CDS
T08369
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
naci
Nisaea acidiphila
Pathway
naci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
naci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NUH88_14695 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
naci03021
]
NUH88_14695 (rpoC)
03400 DNA repair and recombination proteins [BR:
naci03400
]
NUH88_14695 (rpoC)
Enzymes [BR:
naci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NUH88_14695 (rpoC)
Transcription machinery [BR:
naci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NUH88_14695 (rpoC)
DNA repair and recombination proteins [BR:
naci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NUH88_14695 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
DUF294
Motif
Other DBs
NCBI-ProteinID:
UUX48651
UniProt:
A0A9J7ALX9
LinkDB
All DBs
Position
3169790..3173968
Genome browser
AA seq
1392 aa
AA seq
DB search
MNELMNIFGQPSGPQSFDHIRIAIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLKDLERILYFESFVVTEPGLTPFKYGQLLGEEEYFDAQDEYGEDTFKAM
IGAEALKEMMGGLDLDEEKENIREELRTTGSEAKRKKLVKRLKLIEAFEESGCRPEWMIL
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
SLMLHQCGLPKKMALELFKPFIYSKLELYGLASTIKAAKRMVEKERPEVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIILGLYYMTLEREGMPGEGMAFADMGEIEHALNS
GAVTLHTKIEARVDTFDENGEEVTKRVETTPGRLKIAQLLPKNPNLPYSSINKLMTKKEV
QNVIDMVYRHCGQKDTVIFADRLMTLGFGHACRAGISFGKDDLIIPDAKQELVEEAQSEV
KEFEQQYLDGLITQGEKYNKVIDVWSRCTDTVAERMMEHMSNMEPGKPVNSVWMMAHSGA
RGSATQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIITEEDCGTDRGISVKAVVEGGEVIEPLSERILGRTCADDLLA
PLTGEKIADAGTIIDEALVDAIERAGIDEVRLRSVLTCESKVGVCASCYGRDLARGTRVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSIEASFDAKVKVLNRNVVKNSE
GILIVMSRNTEVVLQDEQGRERARHRIPYGSRLFVDDDLAVKPGDKLADWDPYTIPIITE
KEGTAHYVDLVDGVSMKEVTDEATGIASRVVIDWKQQARGGDLRPRVTLRDDAGEVIELA
NGLEARYFMSVDAILSVDNGAKVKAGDVLARIPRESSKTRDITGGLPRVAELFEARKPKD
YAIISESEGRVEFGKDYKTKRRIMVVPQEEEKETVEYLIPKGKHLAVQEGDYVQVGDLLM
DGNPVPHDILNVLGVPALAEYLINEIQDVYRLQGVKINDKHIEVIVRQMLQKVEISDAGD
TTLLVGETVDRDEFDEANEKALAEDLRPAKAIPILQGITKASLQTRSFISAASFQETTRV
LTEAAVSGKKDQLEGLKENVIVGRLIPAGTGSVMNRLKRLAAERDRALAPAQEEAPAIAE
EGEAGEQVPAAE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttgatgaacatctttggtcagccgtccggcccgcagagcttcgatcacatc
cggatcgcgatcgcgagcccggaacggatccgctcctggtccttcggcgagatcaagaag
cccgagaccatcaactaccggaccttcaagccggagcgcgacggtctgttctgcgcccgg
atcttcggtccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaagtat
cgcggcatcatctgcgagaagtgcggcgtcgaggtcaccctctccaaggtccgccgcgag
cggatgggccatatcgagctagcctccccggtcgcccatatctggttcctgaagtcgctg
ccgagccgcatcggcctgctgctggacatgacgctgaaggatctcgagcggatcctctat
ttcgagagcttcgtcgtcaccgagccgggcctgacgccgttcaagtacggccagcttctc
ggcgaggaagagtatttcgacgcccaggacgagtatggcgaggacaccttcaaggccatg
atcggcgccgaggcgctgaaggaaatgatgggcggcctcgatctcgacgaggaaaaggaa
aacattcgcgaggagctccgcaccaccggttcggaagccaagcgcaagaagctggtcaag
cgtctgaagctgatcgaggccttcgaagaatccggctgccgtccggaatggatgatcctc
gacgtgatcccggtcattccgccggaactgcgcccgctggttccgctggatggcggccgc
ttcgcgacctccgaccttaacgatctctatcgccgggtgatcaaccggaacaatcgtctg
aagcggctgatcgagctgcgcgcgccggacatcatcgtccggaacgaaaagcgcatgctg
caggaagccgtcgacgccctgttcgacaacggccgtcgcggccgcgtcatcaccggtgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaaaggcaagcagggccgcttccgt
cagaacctgctcggcaagcgtgtcgactattccggccgttccgtgatcgttgtcggcccg
agcctgatgctgcaccagtgcggtctgccgaagaagatggcgctcgagctgttcaagccg
ttcatttactccaagctggagctctacggcctcgcgagcaccatcaaggccgccaagcga
atggtggaaaaagagcgcccggaagtctgggacatcctcgaagaggtgatccgcgagcat
ccggtgctgctgaaccgcgcgccgaccctgcaccgcctcggcatccaggctttcgagccg
gtgctgatcgaaggcaaggcgatccagctgcacccgctggtctgtaccgcgttcaacgcc
gacttcgacggcgaccagatggcggtccacgtgccgctctctctggaagcacagctcgaa
gcccgcgtgctgatgatgtccaccaacaacattctcagccccgcgaacggtaagccgatc
atcgtgccgtcccaggacatcatcctcggcctctactacatgacccttgagcgcgagggc
atgccgggcgaaggcatggccttcgccgatatgggcgagatcgagcacgctctgaacagc
ggtgctgtcacgctgcacaccaagatcgaagcccgcgtcgatacctttgacgaaaacggc
gaggaagtgaccaagcgggtggaaaccaccccgggccgcctcaagatcgcgcagctgctg
ccgaaaaacccgaacctgccctattcgagcatcaacaagctgatgacgaagaaggaagtt
cagaacgttatcgacatggtctatcgccactgcgggcagaaggacacggtgatcttcgcc
gaccgcctgatgaccctcggcttcggtcatgcctgccgggccggcatctcgttcggcaag
gacgatctgatcattccggacgccaagcaggaactggtcgaagaggcccagtccgaggtg
aaggagttcgagcagcagtatctcgacggtctcatcacccagggcgagaagtacaacaag
gtgatcgacgtctggtcgcgctgcaccgacaccgtcgccgagcgcatgatggagcacatg
tccaacatggagccgggcaagcccgtcaactccgtctggatgatggcccattccggcgct
cgtggttccgcgacgcagatcaagcagctcgccggcatgcgcggcctgatggccaagccg
tccggtgagatcatcgagaccccgatcatctcgaacttcaaggagggcctgaccgtcctt
gaatacttcaactcgacccacggcgcccgtaagggcctcgccgataccgcgctgaagacc
gcgaactccggttacctgacgcgccgtctcgtcgacgtggcccaggattgcatcatcacc
gaagaggattgcgggaccgaccgcggcatctcggtgaaggcggtcgtcgagggtggcgag
gtgatcgaaccgctgagcgagcggatcctcggccggacctgtgccgacgacctgctcgcg
ccgctgaccggcgaaaagatcgccgatgcgggcaccatcatcgacgaggccctggtcgac
gcgatcgagcgggccggcatcgacgaagtgcgtctgcgctcggtgctgacctgcgaaagc
aaagtcggcgtctgtgccagctgctacggccgagatctcgctcgcggtacgcgggtcaat
atcggcgaggcggtcggcgtgattgccgcccagtccatcggcgagccgggcacccagctg
accatgcgaaccttccacatcggcggtgccgcgcagcgtggtgccgaacagtccagcatc
gaggcgtccttcgacgccaaggtgaaggtcctgaaccggaacgtggtgaagaactccgaa
ggcattctgatcgtcatgagccggaacaccgaagtggtgctccaggacgaacagggccgc
gaacgggcccgtcaccggattccgtacggttcgcgccttttcgtcgacgacgatctggcc
gtgaagccgggcgacaagctggccgactgggatccgtacaccattccgatcatcaccgaa
aaggaaggtaccgcgcactatgtcgacctcgtcgacggcgtctccatgaaggaggtcacc
gacgaagcgaccggtatcgcctcccgcgttgtcatcgattggaagcagcaggcccgcggc
ggcgatctgcgtccgcgcgtcacgctgcgtgacgatgcaggtgaggtcatcgaactcgcc
aacggtctggaggcccgctacttcatgtccgtcgacgcgatcctctccgtcgataacggc
gcgaaggtgaaggccggcgacgtgctcgcccgtatcccgcgggaatcctccaagacccgc
gacatcacgggtggtctgccccgcgttgcggaactgttcgaggcgcgcaagccgaaggat
tacgcgatcatcagcgaatccgagggccgcgtcgaattcggcaaggactacaagaccaag
cgccggatcatggtggtgccgcaggaagaggagaaggaaacggtcgagtacctgatcccg
aaaggcaagcacctcgcggttcaggaaggcgactatgtccaggtcggcgacctgctgatg
gacggcaacccggtgccgcacgacatcctcaacgttctcggggttccggcgctcgccgaa
tacctcatcaacgagatccaggacgtctaccgactgcagggcgtgaagatcaacgacaag
catattgaagtgatcgtccgccagatgctgcaaaaggtcgaaatctccgatgccggcgat
accacgctgctggtcggcgagaccgtcgaccgcgacgagtttgacgaggccaacgaaaag
gcgctcgccgaagatctccgtccggccaaggcgatcccgatcctgcaaggcatcaccaag
gcctcgctgcagacccggtccttcatctcggccgcgtccttccaggaaaccacccgcgtc
ctcaccgaggcggccgtttccggaaagaaggatcagctcgaggggctgaaggaaaatgtc
atcgtcggccgcctgatcccggccggtaccggcagcgtgatgaatcgcctgaagcggctt
gccgccgaacgcgatcgcgccctggctccggctcaggaggaagccccggcgatcgccgag
gaaggcgaagccggcgagcaggtccctgccgccgagtaa
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