Nisaea acidiphila: NUH88_20965
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Entry
NUH88_20965 CDS
T08369
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
naci
Nisaea acidiphila
Pathway
naci03410
Base excision repair
naci03430
Mismatch repair
naci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
naci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NUH88_20965 (recJ)
03430 Mismatch repair
NUH88_20965 (recJ)
03440 Homologous recombination
NUH88_20965 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naci03400
]
NUH88_20965 (recJ)
DNA repair and recombination proteins [BR:
naci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NUH88_20965 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NUH88_20965 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NUH88_20965 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
UUX52283
UniProt:
A0A9J7AWU2
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Position
4481108..4482892
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AA seq
594 aa
AA seq
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MTAVKSFLGVERSFTGKRWVPRHGTNPETERIGLAIAQRFGFPELVGRLIAARQIGLDEV
ESYLDPTLKSLMPDPGMLQDMTACIARLERAIRDGERIAVFSDYDVDGATSAAILIRYLR
WIGVDPLLYVPDRVSEGYGPNTPALLKLKEQGAKLIVTLDCGVTAYEPLSAAAAAGLDVV
VVDHHMAEPELPKAVAVVNPNRIDEDGTLGHLAACGVTFLVTVALNRALRENGYFSGKRE
PNLLHLLDLVALGTVCDVVPLKGLNRAFVIQGLKVMAQRGNKGIVALSDVAGVDARPEPY
HLGYVLGPRVNAGGRIGQSDLGARLLLTDSEAEASSLAAELERFNAERREVEANVLAEAE
ALAADQPEELPAVVVAGEGWHPGVIGIVAGRLKERFNRPACVIALENGIGKGSGRSVPGV
SLGPAVIAAHQAGLLLAGGGHAMAAGFTIEADKLDAFRGFLGERIHSELEGEPLVPTLSV
DAPLAAGGASRELADTIQKVGPFGAGNSEPRFVLSDVRVVDVREVGTGHVRCFFAGADGK
KVKGIAFRALEGDLGPALMKSSGRPIHVAGHLRPDDWNGRSDVQILIDDAAEVG
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
ctgacggccgtgaaaagctttctcggcgtcgaacggtccttcaccggcaaacgctgggtg
ccgcggcatggcacaaatcccgagaccgagcggatcggtctcgcgatcgctcagcgcttc
ggctttccggagctggtcggccgcctgatcgcggcccgccaaatcggtctcgacgaggtc
gagagctaccttgatccgaccctgaaatccctgatgccggaccccggcatgctacaggac
atgacggcctgtattgcgcgtctcgaacgcgcgattcgggacggcgagcggatcgcggtc
ttctccgattacgatgtggacggagcgacgtccgccgcgatcctgatccgctacctgcgc
tggattggcgtcgatccgctgctctatgtcccggacagggtgagcgaaggctacggcccg
aacacgcccgcgcttctcaagctgaaggagcagggcgccaagctgatcgttacactggat
tgcggcgtgacggcatacgagccgttgagcgccgccgccgctgcgggactcgatgtcgtc
gtcgtagaccatcacatggcggagccggagctgccgaaagcagtcgccgtggtcaatccg
aaccggatcgacgaggacggcacgctcggccatctcgccgcctgcggcgtcactttcctc
gttacggtcgcgctcaaccgggctctgcgcgagaacggctatttctccggcaagcgggag
ccgaacctgctccatctgcttgatctggttgcgctaggcacggtctgcgacgtggtgccg
ctgaagggactgaatcgcgccttcgtcatccaggggctgaaggtcatggcgcagcgcggc
aacaagggaatcgtcgcgctttccgacgtagccggggtcgatgcccggcccgagccctat
catctcggctacgtgctcggcccgagggtgaacgccggtggtcggatcggacagagcgat
ctcggcgcgcgcttgctgttgacggactcggaggccgaagccagcagtcttgccgccgag
ctggagcgcttcaatgccgagcgccgtgaggtcgaggcgaatgttctggcggaagccgaa
gcgctcgcggccgatcagccggaagaactgccggcggtggtggtcgcgggcgagggctgg
catccgggggttatcggcattgttgccggccgcctcaaggagcgcttcaaccgtccggcc
tgtgtcatcgcgttggagaacgggatcggaaagggatcgggacggtccgttccgggcgtc
tccctcggtcctgcggtcattgcggcgcatcaggcggggctcctgctcgccggtggcggt
catgccatggcggcggggttcacgatcgaagcggataagctggacgcgttccgggggttt
ctcggcgagcggatccatagtgagctcgaaggagagccgcttgtgccgacgctctcggtc
gacgcgcctcttgcggcgggcggcgccagccgggaactcgcggatacgatccagaaagtc
gggccgttcggagcagggaattccgagccgcgtttcgtgctgagcgacgtccgtgtcgtc
gatgtgcgcgaggtcggcacgggtcatgtccgctgcttcttcgcgggtgcggacgggaag
aaggtcaaaggcatcgctttccgggcgctggaaggcgatctcgggcccgccctgatgaag
agttccggcaggccgatccatgtcgcggggcatcttcggcccgatgactggaacggccgc
agcgacgtgcagatcctgatcgacgacgcggccgaggtcggttga
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