Nocardia asteroides: NCTC11293_00016
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Entry
NCTC11293_00016 CDS
T06742
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nad
Nocardia asteroides
Pathway
nad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11293_00016 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nad03021
]
NCTC11293_00016 (rpoC)
03400 DNA repair and recombination proteins [BR:
nad03400
]
NCTC11293_00016 (rpoC)
Enzymes [BR:
nad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11293_00016 (rpoC)
Transcription machinery [BR:
nad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11293_00016 (rpoC)
DNA repair and recombination proteins [BR:
nad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11293_00016 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VEG31004
LinkDB
All DBs
Position
1:complement(12303..16256)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAVKQLIVDEVL
YRELVDRYGEYFTGAMGAESIQKLMENFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQANGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFYLTRLDEKGVGTYQ
AGGKDEPESGVYSSPAEAQMAVDRGELTVRSMIKVRLTEQRPPREIEAELFPEGWHRGDA
WLAETTLGRVLFNDLLPADYAFINEPMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPEKAEIMERYEAMADQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGTALRSHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVPI
AEKQADGSLIRDAHVETSTYARTLATDAVDEKGNVVVAKGADLGDPALEALLEAGITEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGSDEVVYDKL
SKRQRLRVFKHDDGTERLLADGDHVEVGQQLLEGAADPHEVLRVMGPRQVQVHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFEASNRRVVAEGGEP
ASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDSFGSSTGAAVPLDDYGFSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggccaccgccgaagacatc
cgccagtggagctatggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccc
gtcacccacatctggtacttcaagggcgttccgtcgcgcctcggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcgtcggtgtcgac
gaggagctgcgccacaacgagctcagcaccctcgaggccgagatggaggtcgagaagaag
gctgtcgccgatcagcgcgacgccgacctcgaggcccgtgcgcagaagctggaagccgac
ctggccgagctggaggccgagggcgccaagtccgacgtgcgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgcgcccagcgtgagctggatcgtctcgac
gagatctggaccaccttcaccaagctggccgtcaagcagctcatcgtcgacgaggtgctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggcgccatgggtgcggagtcc
atccagaagctgatggagaacttcgacatcgacgccgaggccgagaacctgcgcgagacc
attcgctcgggcaagggccagaagaagctgcgcgcgctcaagcggctcaaggtcgtcgcg
gccttccaggccaacggcaactcgcccatgggcatggtgctcgacgctgttccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgtttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgtcgtggtcgcccggtcaccggtccgggtaaccgcccgctgaag
tccctgagcgacctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcgctcgagctgttcaagccgttcgtcatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccgcctgggtatccaggccttcgagccgcagctggtcgaaggcaag
gccatccagctgcacccgctcgtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtccccggcgtcgggtcgcccgctggcgatgccgcgtctggac
atggtgaccggcctgttctacctgacccgtctcgacgagaagggtgtcggcacctaccag
gccggcggcaaggacgagccggagtcgggcgtgtactcctcgcccgccgaggcccagatg
gccgtcgaccgcggtgagctcaccgtgcgttcgatgatcaaggtgcgtctcaccgagcag
cgcccgccgcgcgagatcgaggcggagctgttccccgagggctggcaccgcggcgacgcg
tggctggccgagaccaccctcggtcgcgtgctgttcaacgatctgctcccggcggactac
gcgttcatcaacgagccgatgccgaagaagcggcaggccacgatcatcaacgatctggcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggtgtcaccgtctccatgtcggacgtgctcgttccgccggag
aaggccgagatcatggagcggtacgaggccatggcggatcagatcgagaagaagtaccag
cgtggtgctctcgatcaccaggagcgcaacaacgccctggtcaagatctggcaggaagcg
accgaagaggtcggtacggcgctgcgttcgcactacccggccgacaacccgatcatcacg
atcgtcgactcgggtgcgaccggtaacttcacccagactcgtaccctcgccggtatgaag
ggtctggtgacgaacccgaagggtgagttcatcccgcgcccgatcaagtcctccttccgt
gagggcctgaccgtgctcgagtacttcatcaacacccacggtgctcgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtgcgcgagcacgactgtggcaccgagcgcggcatcgtcgtgccgatc
gcggagaagcaggccgacggctcgctcatccgggacgcgcacgtcgagacctcgacctac
gcgcgcaccctggcgaccgacgcggtcgacgagaagggcaacgtcgtcgtggccaagggc
gccgatctcggcgacccggctctggaggcgctgctcgaggccggtatcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggcaccggcgtctgcgccacctgctacggccgc
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcg
ggtgacgacatcaccggtggtctgccgcgtgtccaggagctcttcgaggcccgtgtcccc
aagggcaaggcgccgatcgcggaggtctcgggccgggtgcgcctggaggacgacgaccgc
ttctacaagatcaccatcatcccggacgacggttcggacgaagtggtctacgacaagctg
tcgaagcgtcagcgtctgcgtgtgttcaagcacgacgacggcaccgagcgcctgctggcc
gacggtgaccacgtggaggtgggtcagcagctgctcgagggcgctgccgatccgcacgag
gtgctgcgcgtgatgggtccccgtcaggtgcaggtccacctggtccacgaggtccaggag
gtctaccgctcgcagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccag
atgctgcgtcgcgtgacgatcatcgattcgggtgcgaccgagttcctgcccggttcgctt
accgagcgcgccgagttcgaggcctcgaaccgtcgcgtggtggccgagggtggcgagccc
gcctccggccgtccggtgctgatgggtatcaccaaggcgtcgctggccaccgattcgtgg
ctgtcggcggcctccttccaggagaccacccgagtgctgacggacgcggccatcaactgc
cgctccgacaagctgatcggcctgaaggagaacgtgatcatcggtaagctcatcccggcc
ggtaccggtatcaaccgctaccgcaacatccaggtgcagccgaccgaagaagcccgtgcc
gccgcgtacgcggtgccgtcctacgacgacacctactactcgccggacagcttcggctcc
tccaccggtgccgcggtgccgctggacgactacggcttcagcgactaccgctaa
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