Nocardia asteroides: NCTC11293_01424
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Entry
NCTC11293_01424 CDS
T06742
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
nad
Nocardia asteroides
Brite
KEGG Orthology (KO) [BR:
nad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nad03019
]
NCTC11293_01424
Enzymes [BR:
nad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC11293_01424
Messenger RNA biogenesis [BR:
nad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC11293_01424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
AAA_19
AAA_30
HA2_N
AAA_22
AAA_25
AAA_28
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
VEG33126
LinkDB
All DBs
Position
1:1463606..1466320
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AA seq
904 aa
AA seq
DB search
MKLPELPDLPVRSALGGIVETLVERGVAVLVAPPGTGKTTLVPLALAAGTEGRVVVAEPR
RLAARAAAARMAALLGERVGETVGYAVRGDRKVGPRTRIEVVTSGLLVRRLQRDPELAGV
GTVVLDECHERHLDADLLLALLLDARSGLRPDLRVLATSATVAADRLAQLLAVGEPDAPS
GRAPVLEVRGRAYPVAFDYLPALPRERVEAQVARAVRAALAGGDGDVLVFLPGVGEINRT
AGLLRDLDDVDVLPLHGRLAAAAQDSALRAGARRRVVLSTAVAESSLTVPGVRAVVDSGL
ARVPRIDHRRGLSGLATVRVSAAVAEQRAGRAGREGPGHAWRCWPEYEHQTLPAYPEPEI
RTAELTRLALELACWGTPDGSGLSWWDAPPEGGLAAGRAVLRALGALDNTDTVTDRGRAM
AALGLHPRLARALLDGAREVGPRAAAEMVALMDDDSLASGVDAAAALRTLRAERPQRWTR
EVRRLADLVAAHLPREIGGTPADSAQVRELAAHELERAGNSGPPSEPAASDNSGAQGPGR
VGSAVGAGQGVGAADVGRGMATADGDSGPSVGDRVGGRADSAALMIALAYPERLARRRTS
GQSYLMAGGTAVTLPPGSGLGAAEWLAVAVADRDPGRAEGRIRLAAIADEELARAAAPGL
VVSAEEVRWESGDVVARRVERLGAIILTEKPLREPDSALLQEALQEGLRSEGLELLRWDD
DARSLRQRLDFLHRILGAPWPAVDDDALLADLDPWLGPELTIARRRTDLTRIDAGTALRR
LLPWPEAARLDELAPERLEVPSGSRVRLDYTADPPVLAVKVQEIFGWSTPPTLADGRAPI
LLHLLSPAQRPVAVTADLPSFWKNGWPQVRADLRGRYPKHSWPEDPTTVTAHRGTARNAT
KPAR
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcctgaacttcctgatctgccggtgcggtccgcgctgggcgggatcgtcgag
acgctggtcgagcggggcgtcgcggtgttggtcgcgccgccggggaccgggaagacgacc
ctggtgccgttggcgttggccgcggggaccgaggggcgggtcgtcgtggccgagccgcgg
cggttggcggcgcgggcggcggcggcgcgaatggcggcgctgctgggggagcgggtcggg
gagaccgtcgggtacgcggtgcgcggtgaccggaaggtcgggccgaggacgcggatcgaa
gtggtgacctcggggctgctggtgcggcggttgcagcgcgatcccgagctggccggggtg
ggcacggtcgtgctcgacgaatgtcatgagcggcacctggacgctgatctgctgttggcg
ttgctgctcgacgcgcggtccggattgcggccggacctgcgggtgctcgccacctcggcg
acggtcgcggcggatcggctggcccagctgctcgccgtcggggaaccggacgcaccgtcg
gggcgggcgccggtgctggaggtgcgcggacgggcctatccggtcgcgttcgactatctg
cccgctctgccgcgtgagcgggtcgaagcgcaggtggcgcgggcggtgcgcgccgcgctc
gcgggtggtgacggtgacgtgctcgtcttcctgcccggggtcggcgagatcaaccggacc
gcgggactgctgcgcgacctcgacgacgtcgacgtgctgccgctgcacggacgcctcgcc
gccgcggcgcaggattcggcgctgcgcgcgggcgcccggcgccgggtcgtcctgtcgacg
gcggtggccgaatccagcctcaccgtgccgggcgtgcgcgcggtggtggattccggactg
gccagggtgcctcgcatcgaccatcggcgtggactgtccgggctcgcgacggtgcgggta
tcggccgcggtggccgaacagcgcgcgggccgcgcgggccgggaagggccgggccacgcc
tggcgctgctggcccgaatacgagcaccagactctgcccgcctaccccgaacccgagatc
cggacggccgaactcacccgtctcgcactggaattggcgtgctggggcacgcccgacggc
tccggcctgtcctggtgggacgccccacccgaaggcggcctggccgcgggccgcgccgtc
ctgcgcgcgctcggcgccctcgacaacaccgacaccgtcaccgaccgcggccgcgccatg
gccgccctcggtctgcatccccgcctggcccgcgccctcctcgacggcgcccgcgaggtg
ggcccccgcgcggccgccgaaatggtcgccctcatggacgacgactccctggcctccgga
gtggacgcggccgccgcgctgcggaccctccgggccgaacgcccacagcgctggaccaga
gaagtccggcgcctggccgacctcgtcgccgcgcatctgccccgcgagatcgggggcaca
cccgcggattccgcgcaggtacgcgaactggcggcccacgaactagagcgtgcaggcaat
tcggggccaccttcggaaccggcagcgagtgacaactccggcgcgcaaggtccgggccga
gtagggtcggccgtcggcgcgggtcagggagtgggtgccgccgacgtgggccgaggtatg
gcgacagccgacggcgactccggcccgtcggtgggggaccgggtcggtgggcgagccgac
tccgcagcgctcatgatcgccttggcgtaccccgagcgactggcgcggcggcggacgagc
gggcagtcgtatctcatggcaggcggtacggcggtcactttgccgccggggtcgggactc
ggtgcggcggaatggctcgcggtggcggtcgcggatcgcgaccccgggcgcgccgaaggg
cgaattcggttggcggccatcgccgatgaggaactggcgcgggctgctgcgccggggctc
gtcgtctcggcggaggaggtgcggtgggagtccggtgacgtggtcgcccggcgagtggag
cggctgggcgcgatcatcctgacggaaaagccgctgcgcgaaccggattcggccctactc
caggaggcgctccaggagggtctgcgttcggagggactcgagctcctgcgctgggacgac
gacgcccgctccctgcgtcagcgcctcgacttcctgcaccgcatcctcggcgcgccctgg
cccgccgtcgacgacgacgcccttctcgccgacctcgacccctggctcggccccgaactc
accatcgcccgccgccgcaccgacctcacccgcatcgacgcgggcaccgccctgcgccgt
ctgctcccgtggcccgaggccgcccgcctggacgagctggctcccgaacgcctcgaggtc
ccgtccggcagccgcgtccgcctcgactacaccgccgacccgccggtcctggcggtgaag
gtccaggagatcttcggctggagcaccccgcccaccctggccgacggccgcgccccgatc
ctgctgcacctgctctccccagcccagcgtcccgtcgccgtcaccgccgacctgccctct
ttctggaagaatgggtggccccaggtccgcgccgacctgcgcggccgctaccccaaacat
tcctggcccgaagaccccaccaccgtcaccgcccaccgcggcacagcccgcaacgccacg
aaaccagctcgctga
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