Nocardia asteroides: NCTC11293_01484
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Entry
NCTC11293_01484 CDS
T06742
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nad
Nocardia asteroides
Pathway
nad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC11293_01484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nad03400
]
NCTC11293_01484
Enzymes [BR:
nad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC11293_01484
DNA repair and recombination proteins [BR:
nad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC11293_01484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
VEG33186
LinkDB
All DBs
Position
1:1527444..1529705
Genome browser
AA seq
753 aa
AA seq
DB search
MVRREFRGPPGAPAIEVELSNLDKVLYPETGTTKGEVIAYYSAIAEAMLPHIAGRPVTRK
RWPNGVDQSDFFEKNLPEHAPAWIQRRALEHSDRRVHYPLIDSEAGMAWLGQQAALEVHV
PQWRFDGDQRGDATRIVFDLDPGPGAGLPECARVALDVRDMLAGIGMRAFPVTSGSKGIH
VYVPLERPLSSRGASTVAKQVAANLEQLHPDLVTATMAKSARTGKVFLDWSQNNAAKTTI
APYSLRGRAEPNAAAPRDWSELEDAKALRHLRFDEVLARWRADGDLLAELDPPLPSGPDS
LTKYRSMRDAERTPEPVPADAPRPGPGDRFVVQEHHARRLHWDVRLERDGVLASWAVPKG
PPTEPKHNRLAVRTEDHPIEYLHFHGTIPKGEYGAGEMTIWDTGTYVTEKWRDDEVIVEF
DGQRLHGRYAFIQTKGDQWLMHFMRDQVRREPVADNGTGDLPRGLSPMLATAGEVTKLSA
QEWAFETKWDGFRVIVEVTDGAVIVRSRAGNTVTGRYPRLAALGEELAGHRVVLDGEAVV
FDAKGLSDISALQADSARAVFVAFDVLFLDGTSLLRKKYSDRRAVLEALGRLAPSLNVSA
LLDGSGAEAMRASQEQGQEGVVAKRLESVYQPGKRSQTWIKERNWRSREVVVGGWRRSDK
REFKSLLLGIPHENGLIYVGRVGTGFDTEQARRISAELRRLRRETTPFVNEMTAEERRDA
EWVTPNLTGTVRFQAWTDTGRLWHPVWDGVTPT
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggtccgccgggagttccggggtccgccgggtgcgccggccatcgaggttgagctcagc
aacctcgacaaggtgctgtacccggagaccgggaccaccaagggcgaggtgatcgcctac
tactcggcgatcgccgaggcgatgctgccgcatatcgcgggccgcccggtcaccaggaag
cgctggccgaacggggtcgaccagtccgacttcttcgagaagaatctgcccgagcacgcc
cccgcgtggatccagcgccgcgcgctcgagcattccgaccgcagggtgcattacccgctg
atcgactccgaggcgggcatggcctggctcgggcaacaggcggcactggaagtccatgtg
ccgcagtggcgtttcgacggtgatcagcgtggtgacgccacccgcatcgtcttcgatctc
gaccccggtcccggcgccggtctgcccgaatgcgcgcgggtggcgctggacgtgcgcgac
atgctcgccggcatcgggatgcgcgccttcccggtgaccagcggcagcaagggaattcac
gtctacgtgccgctggagcgtccgctgagctcgcggggcgcgtcgaccgtggccaagcag
gtcgccgccaatctcgaacagctgcacccggatctggtgacggcgacgatggcgaagtcg
gcccgcaccggcaaggtgttcctggactggagccagaacaacgcggccaagaccaccatc
gccccgtactcgctgcgcggacgcgccgagcccaatgccgccgcaccccgcgactggagc
gagctcgaggacgcgaaagcattgcgccacctccggttcgacgaggtactcgcgcgctgg
cgggccgacggcgacctgctggccgagctggacccgccgctgccgagcggccccgactcg
ctcaccaaataccgcagcatgcgcgatgccgagcgcaccccggaacccgtacccgccgac
gcgccgcggccgggtcccggcgaccggttcgtggtgcaggaacaccacgcccgcaggctg
cactgggacgtgcgcctggaacgcgacggcgtcctggcgtcctgggcggtgcccaagggc
ccgcccaccgagccgaaacacaaccgcctcgccgtgcgcaccgaggaccacccgatcgag
tacctgcacttccacggcaccatcccgaagggcgaatacggcgcgggcgagatgacgatc
tgggacaccggcacctacgtcaccgagaagtggcgcgacgacgaggtgatcgtcgaattc
gacgggcagcgcctgcacggccgctacgccttcattcagaccaagggcgaccagtggctc
atgcacttcatgcgcgaccaggtgcgacgggaaccggtggcggacaacggcaccggcgat
ctgccgcgcggcctgtcgccgatgctcgccaccgcgggcgaggtgacgaagctgagcgcg
caggagtgggcgttcgagaccaagtgggacggcttccgggtgatcgtcgaggtcaccgac
ggtgccgtcatcgtccgcagccgggcgggcaacaccgtcaccggccgctacccgcgcctg
gccgcgctcggcgaggaactggccgggcaccgggtggtgctcgatggcgaggcggtggtg
ttcgacgcgaagggcctctcggacatctcggcgctgcaggcggattcggcgcgcgcggtg
ttcgtcgccttcgatgtgctcttcctcgacggcacctcgctgctgcgcaagaagtacagc
gaccggcgcgcggtgctggaggcgctgggcaggctggcgccctcgctgaatgtgtcggcg
ctgctggacggttcgggagccgaggccatgcgggccagtcaggagcagggacaggagggc
gtggtcgccaagcggctggaatcggtgtatcagccgggcaagcgcagccagacctggatc
aaggagcggaattggcgatccagggaggtggtggtgggcgggtggcggcgcagcgacaaa
cgcgagttcaaatcgctgctgctcgggataccgcacgagaacgggctgatctacgtgggc
cgcgtcggcaccggcttcgacactgagcaggcgcggcggatcagcgccgaactgcgccgc
ctgcgccgggagaccaccccgttcgtcaacgagatgaccgccgaggagcgccgcgacgcc
gaatgggtcaccccgaatctcaccggcacggtgcgcttccaagcctggaccgacaccgga
cggctgtggcatcccgtgtgggacggtgtgacgccgacctga
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