Nocardia asteroides: NCTC11293_05979
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Entry
NCTC11293_05979 CDS
T06742
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nad
Nocardia asteroides
Pathway
nad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11293_05979 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nad03019
]
NCTC11293_05979 (deaD)
03009 Ribosome biogenesis [BR:
nad03009
]
NCTC11293_05979 (deaD)
Enzymes [BR:
nad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11293_05979 (deaD)
Messenger RNA biogenesis [BR:
nad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11293_05979 (deaD)
Ribosome biogenesis [BR:
nad03009
]
Prokaryotic type
rRNA helicases
NCTC11293_05979 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
HEM4
adh_short
Motif
Other DBs
NCBI-ProteinID:
VEG37647
LinkDB
All DBs
Position
1:complement(6421091..6422887)
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AA seq
598 aa
AA seq
DB search
MSTNEVDSVPADDDRHDEGPTFADLGIDDRILAAIADVGYESPSPIQAATIPPLLTGADV
VGLAQTGTGKTAAFAIPILMGLDTAQKKPSALVLAPTRELAIQVAEAFGKYSAHIPGLHV
LPIYGGQSYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLRYLVLDEADEMLKMGF
QEDVERILADTPEDKQVALFSATMPGAIRKISKQYLHDPIEITVKSKSQTNTNITQRWVQ
VSHQRKLDALTRVLEVEDFEAMIIFVRTKQATEELAEKLRSRGFSAAAINGDIAQNQRER
TIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQAL
LFVAPRERHLLKSIERTTRHPLIEMQLPSVDDVNATRVSKFGDMITENLSSDNVALFRKL
IEDYEAEHNTPLVDIAAALAVGGFDGDNFFMEPEPEPAPRRERDRDRERAPRRYDDDDRA
SRGPSFSRETGQELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDYSLVE
LPANLPHETLEALRRTRISGVLIQLQPDQGPPAQRLNSRGPRRDRDPRPRTERRKPRS
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgagtactaatgaggtcgacagcgttcctgccgacgacgacaggcacgacgaaggcccg
accttcgccgatctcgggatcgatgaccgcatcctggcggccatcgccgatgtgggctac
gagtccccgtccccgatccaggcggcgaccatcccgccgctgctcaccggcgccgatgtc
gtcggtctggcgcagaccggcaccggcaagaccgcggccttcgcgatcccgatcctgatg
ggtctggacaccgcgcagaagaagccgagcgcgctggtgctcgcgcccacccgggagctc
gccatccaggtcgccgaggccttcggcaagtactccgcgcacatccccggcctgcacgtg
ctgcccatctacggcgggcagagctacggcgtgcagctgtcgggcctgcgccgcggcgcg
cacgtggtggtcggtaccccgggccgcgtcatcgatcacctggagaagggcacgctggat
ctgtcccagctgcgctacctggtgctcgacgaggccgacgagatgctcaagatgggcttc
caggaagacgtcgagcgcatcctggccgacacgcccgaggacaagcaggtcgcgctgttc
tcggcgaccatgccgggcgcgatccgcaagatctccaagcagtacctgcacgacccgatc
gagatcacggtcaagtccaagtcgcagaccaacaccaacatcacccagcgctgggtgcag
gtgtcgcatcagcgcaagctcgacgccctcacccgcgtgctcgaggtcgaggacttcgag
gcgatgatcatcttcgtccgcaccaagcaggccaccgaggagctggccgagaagctgcgc
tcgcgtggtttctccgccgcggcgatcaacggtgacatcgcgcagaaccagcgtgagcgc
accatcggccagctgaagtcgggcgcgctcgacatcctggtcgccaccgacgtggccgcc
cgcggtctcgacgtggatcgcatctcgcacgtcgtcaactacgacatcccgcacgacacc
gagtcctacgtgcaccgcatcggccgcaccggtcgcgcgggccgctcgggtcaggcgctg
ctgttcgtcgcgccgcgcgagcggcacctgctcaagtcgatcgagcgcaccacccggcat
ccgctcatcgagatgcagctgcccagcgtggacgacgtcaacgcgacccgcgtctcgaag
ttcggcgacatgatcaccgagaacctgtcctcggacaatgtggcgctgttccgcaagctc
atcgaggactacgaggccgagcacaacacgccgctggtcgacatcgcggccgcgctggcc
gtcggcggcttcgacggcgacaacttcttcatggagcccgagccggagcccgccccgcgg
cgcgagcgtgatcgggaccgtgagcgcgccccgcgccgctacgacgacgacgatcgcgcg
agccgcggcccgtcgttctcccgcgagaccggccaggagctggcgacctaccggatcagc
gtcggcaagcggcaccgcgtggtgccgggcgcgatcgtgggcgccatcgccaacgagggc
ggcctgcgccgcagcgacttcgggcacatcagcatccggccggactacagcctggtggag
ctgcctgccaacctgccgcacgagacgctggaagccttgcgccgcaccaggatcagcggc
gtgctgatccagctgcagcccgaccagggcccgccggcacagcggctgaactcgcgcggt
ccgcgtcgcgatcgggacccgcgcccgcgcaccgaacggcgcaagccccgctcctag
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