Neomicrococcus aestuarii: BHE16_01120
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Entry
BHE16_01120 CDS
T04559
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nae
Neomicrococcus aestuarii
Brite
KEGG Orthology (KO) [BR:
nae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nae03019
]
BHE16_01120
Enzymes [BR:
nae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BHE16_01120
Messenger RNA biogenesis [BR:
nae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BHE16_01120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
SLFN-g3_helicase
AAA_30
Zeta_toxin
AAA_25
ABC_tran
FtsK_SpoIIIE
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
APF39848
UniProt:
A0A1L2ZLF4
LinkDB
All DBs
Position
complement(256613..260632)
Genome browser
AA seq
1339 aa
AA seq
DB search
MALTISYPESLPVSARREDIKKAISEHQVVIVAGETGSGKTTQLPKMLLEMGYGERGVIG
HTQPRRLAARTVAERLAEELSVEIGDEVGYQVRFTGEVSKQTQVKLMTDGIMLAEIPQDR
KLERYSAIIIDEAHERSLNIDFLMGYLKRLLPQRPDLKIVITSATIDPERFANHFGTETT
PAPIIEVSGRTYPVEIRYRPLAADPSLDEDELDPESALEEDKDPVDGICDAVVELSKEAP
GDILVFLSGEREIRDAADALRSLVERNRRLAGTEILPLFARLSLAEQHRVFNPGSQRRII
LATNVAETSLTVPGIKYVIDTGVARISRYSHRTKVQRLPIERISQASANQRSGRCGRVSD
GIAIRLYSEDDFTSRPEFTDPEILRTNLASVILSMSAMGIISSPKDVGDFPFVEKPDAKA
VNDGVLLLRELGAMGGGSGAGNGTAGGRNANGITRTGRQLAKLPVDVRLGRMILEAGQRD
CAKEVMVLAAALSIQDPRERPSQESGKRERATELHRRFEDESSDFLGYLNLWRYLQEKQQ
ELSSSAFRRLCKQEFINYLRVREWQDLFTQLRQLAKSVGIKIAAAPIDPVANADNVHMSL
LSGLVSHIGLWDERKREYQGARGSRFAVFPGSSLFKKKPDWVMAAELVETSRLWARTNAK
FDPAWVEIVAPHLVKKTYSEPHWSSTLGSVMAYEKVTAFGLPVVPQRRIQFRNVNLRLAR
EMFIQHALVEGDWKTRHAFFARNRKLLEDIEELETRTRRRDLRVSDQDLFDFYNERVGPD
VTSERHFDAWWKKAQQDNPTLLDFDADALRSDEADNVDESAYPRTMRHGDLELDLRYEFN
PAARDDESDGVTVRVPVLFLNQLDPARFAWQVPGFREELVTALIKSLPKNIRKNFVPAPD
VARQATAALNAEFDPTTDALEPSLELVLRRLRGFVIPPGSWNWDAVPAHLKAKFEVLGST
NKVLARSEDLKYLQVSLATQNRQAIAASLESPQPGASKTPGAKATAGTQGNKNAPSATPK
TLPKGKNARTAGNSAASEVRGTWEHAGIKQWDQNVGERGIIHRKIESTVAGKTITAYPAL
ADEVTTVRLTVFRSVAEQQAAHRAGVVRLLQLTIPSPARYVLDHLKNNEKLVFSQNPHGS
VDELIRDSSLAAIDALVPANLPFTQEEFQKLYDAVRADLIDTVFSITALVEKTLSSSLRI
TKRLSASHSPVLAPSLADIKSQLELLVYPGFVARTGAAQLRHLPRYLQGMEKRLDKLQSG
SAPREAQNITAIQALEDEYDSALDQLLPNQSTPAELAKIKWMLEEFRVSLFAQELGTAHP
VSEKRIRTALREALAQLKN
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggccttgacgatttcataccccgaatccctgcctgttagcgcgcgccgcgaagatatc
aagaaggcaatttctgagcaccaagtggtgatcgttgccggtgaaacgggttcgggcaag
accacgcagctccccaagatgcttttggagatggggtacggcgagcgcggtgtcattgga
catacgcagccccgtcgtctggcagcacgcacggtcgctgagcgtcttgctgaggagctt
agcgtggagatcggcgacgaggtgggctaccaggttcgcttcaccggcgaggtctctaag
caaacccaagtgaagctcatgacggacggcattatgctggccgagatcccgcaggatcgt
aagctcgagcgttacagcgccatcatcattgacgaggcccacgagcgcagcttgaacatc
gatttcctcatggggtacctcaagcggctcctcccccagcgcccggatctgaagattgtc
atcacgtcggcaacgattgaccccgagcgcttcgccaaccactttggtaccgaaaccacc
ccggcacccatcatcgaggtgtccgggcgtacctatccggtggaaatccgctaccggccg
ttggctgcagacccctccttggatgaggatgagctggatcccgagtccgctcttgaagaa
gacaaagaccccgtcgacggtatttgcgatgccgtggttgaactgtccaaggaagccccc
ggcgacattctggtgttcctctcgggagaacgggagatccgcgacgccgcggatgcacta
cgttcacttgtggaacgcaatcgccgtctcgctggcacggagatcctgccgctgtttgca
cgcttgtccttggccgagcagcaccgcgtcttcaatcccggttcccagcggcgcattatc
ttggcaacgaacgttgcggaaacctcgctgacggttccgggcatcaagtacgtgatcgat
acgggtgttgcacgtatctcccggtactcacaccgcactaaggttcagcggctccccatt
gaacgtatctcgcaagcgagcgctaatcagcgttcgggccgttgtggccgcgtgagcgat
ggcattgccatccgcctgtattccgaagacgatttcacctcacgcccggagttcacggac
cctgaaatcctgcgcaccaatctggcctcggtcatattgagcatgagcgcgatgggcatc
atttcttccccgaaagatgttggcgatttcccgttcgttgagaagccggatgcgaaggcc
gtgaacgacggcgtgctgttgttgcgtgagctgggcgccatgggtggcggcagcggcgcg
ggcaacgggactgccggcggcaggaacgccaacggcatcactcgtaccggacgccagcta
gccaaacttcccgtggacgtgcgcttaggtcgcatgatcctagaggccggtcagcgcgac
tgtgccaaggaagtcatggttttggctgccgcgctaagcattcaggaccctcgagagcgc
ccttctcaagagagcggaaagcgcgagcgcgccaccgagcttcatcgacgtttcgaggac
gaatcctctgacttcttgggttacttgaatttgtggcgttaccttcaggagaagcagcaa
gaactctcctcgtccgctttccggcgcttgtgcaagcaagagttcatcaactatctccgc
gtgcgcgagtggcaggacctgttcactcagttgcgccagttggccaagtccgtgggcatc
aagatcgcagcggctcccattgatccagtagccaacgcggacaacgtacacatgtctttg
ctctccggactggtgagtcacattggtttatgggatgaacgcaagcgcgaataccaaggc
gcgcgcggcagtcgcttcgcagtcttccccgggtcctcattgttcaagaagaagcccgat
tgggtcatggccgccgagctcgtggaaacctcccgcctctgggcgaggactaacgccaag
ttcgatcccgcgtgggtggagattgttgccccccacctcgtgaagaagacctactctgaa
ccccattggtcttccacgttgggatcggtcatggcctatgagaaggtcacggcttttggt
ctcccggtggtcccccaacggcgtatccagttccgcaacgtcaacctgcgtttggcgcgc
gaaatgttcattcagcacgcgctcgtggaaggcgattggaagacccgccacgctttcttc
gcccggaaccgtaagctccttgaggacattgaagagctcgaaactcgaactcgtcgccgc
gacctccgcgtctccgatcaagacctctttgacttctataacgagcgcgtcggtcccgac
gtcacgagtgaacgccactttgacgcgtggtggaagaaggcccagcaggacaaccccaca
cttctagacttcgacgccgacgctctgcgtagcgatgaagcggacaacgtggatgagagc
gcctacccgcgcaccatgcggcacggcgatcttgagctggatttgcgctacgagttcaat
cccgcggcgcgcgacgacgagagcgacggtgtaaccgttcgtgtccccgtgctgttcttg
aaccagctggatccggcacgttttgcctggcaggttccgggcttccgagaagaactggtc
acggcgctcatcaagtctttgcccaagaacatccggaagaactttgtcccggccccggac
gtggcccgtcaagcaactgccgcgctcaacgccgagtttgaccccactaccgatgcgctg
gagccttcccttgagctggttcttcgacgtctacgcggattcgtcatcccgcccggctcc
tggaattgggacgcagttcctgcacaccttaaagcgaagttcgaagtactcggttccacc
aacaaggtgttggctcgttccgaagacctcaagtacctgcaggtctctcttgccacccag
aaccgacaggcgattgctgcaagcctagaatcaccccagcccggtgcatcaaagacaccc
ggggctaaagcgactgccggcactcaagggaacaagaacgcacccagcgccacacccaaa
actttgccgaagggtaaaaatgctcggacggctggcaactctgcagcctcggaggtgcgc
ggcacgtgggaacacgcaggcatcaaacagtgggaccagaacgtcggcgaacgcggaatc
attcatcgcaagatcgaatccacggttgccggaaaaaccatcacggcctatccggcactt
gcggacgaagtcactaccgttcggttgacggtttttagaagcgtcgccgaacaacaagcg
gctcaccgtgccggtgtagtgcgtttgcttcagctgaccattccttcgccggctcgctac
gtgctggatcacctgaaaaacaacgagaaactggtgttttcgcagaacccgcacggttcc
gtggatgaactgattcgggacagttcgctggccgcaattgacgcgttggtgccagcgaat
ctgccgttcacgcaagaagagttccaaaagctttacgatgcagtgcgcgcagatttgatc
gacacggtctttagcatcacggctttggtggagaaaacactgtcaagctcgctgcgcatc
accaagcgactctcggcttcacattccccggttttggcgccgagtctggcagatatcaag
agccagctggagttgctggtgtacccggggtttgtggcccgcacgggtgcagcacaattg
cgacaccttccgcggtacttgcagggcatggagaagcggctggataagcttcagtccggt
tcggctcctcgggaagctcagaacatcacggcgattcaggcgctcgaggatgagtatgac
tccgcgttggatcagctgttgcccaaccaaagcacgccagcggagctggcaaagattaag
tggatgcttgaagagttccgtgtgagcctgtttgcccaagaactcggcacggcgcatccg
gtgtcggaaaagcggatccgcaccgcgctccgcgaagcgttggcccagctcaagaactga
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integrated database retrieval system
