Novosphingobium aeonii: ACLIMP_04480
Help
Entry
ACLIMP_04480 CDS
T12072
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
naeo
Novosphingobium aeonii
Pathway
naeo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
naeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
ACLIMP_04480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naeo03019
]
ACLIMP_04480
03009 Ribosome biogenesis [BR:
naeo03009
]
ACLIMP_04480
04131 Membrane trafficking [BR:
naeo04131
]
ACLIMP_04480
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
naeo04147
]
ACLIMP_04480
Messenger RNA biogenesis [BR:
naeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
ACLIMP_04480
Ribosome biogenesis [BR:
naeo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
ACLIMP_04480
Membrane trafficking [BR:
naeo04131
]
SNARE
SNARE associated proteins
Others
ACLIMP_04480
Autophagy
Aggrephagy
Other aggrephagy associated proteins
ACLIMP_04480
Exosome [BR:
naeo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
ACLIMP_04480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
AAA_5
CDC48_2
AAA_2
AAA_14
AAA_33
TIP49
nSTAND3
IstB_IS21
NACHT
NPHP3_N
RNA_helicase
AAA_18
AAA_28
AAA_7
Mg_chelatase
AAA_17
Sigma54_activat
DUF815
TsaE
AAA_30
AAA_3
ABC_tran
Parvo_NS1
AAA_24
AAA_11
NB-ARC
Zeta_toxin
ATPase
Motif
Other DBs
NCBI-ProteinID:
XZN80650
LinkDB
All DBs
Position
1:complement(880958..883273)
Genome browser
AA seq
771 aa
AA seq
DB search
MADAPTHVDERTVKLQVAAARQEESGQGIARLSRGSLSAIGAMEGDVLELTGKSVTVARA
VLAYAEDEGLEVIRLDGLQRGNAEVGSGDHVTVRKAESRPAQRVVFAPAQKDMRLQGPPA
ALKRNFFQRPMVQGDLVATTGQQQVADIPPQLRRMFNAPAYALTQIRLNVVSTTPRGIVH
IDENTEVELRETFEEAHDARGDVNYDDVGGMSDTIRQLREMVELPLRYPELFTRLGVAPP
KGVLLHGPPGTGKTRLAQAVANESEASFFSINGPEIMGSGYGESEKALREVFEEATKAAP
AIIFIDEIDSIAPKRSQVHGEAEKRLVAQLLTLMDGLNSRAHVVVIAATNRPDAIDEALR
RPGRFDREIVIGVPDEAGRREIIGIHTRGMPLGDKVDLGELARTTHGFVGADLAALAREA
AIEAVRRIMPRLDLEARTIPPEVLEDLQVIREDFVAALKRVQPSAMREVMVQVPNIGWAD
IGGLDEAQLKLKEGVELPLKTPEAFHKLGIRPAKGFLLYGPPGTGKTLLAKAVAKEAEAN
FISIKSSDLLSKWYGESEQQIARLFARARQVAPCVIFIDEIDSLVPARGMGGGGGEPQVT
SRVVNTILAEMDGMEELQSVVLIGATNRPALVDPALLRPGRFDELVYVGTPDEAGREHIL
GIHTGRMPLADDVSLHDIAARTERFTGADLEDVVRRAGLIAIRKRGAEVEQVRREDFEDA
LEDSRATVTEEMEAEYERMKGELKKRAMEVIPIGFIAPGMVESRREKKHGD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccccaacccatgtcgacgaacggacggtgaagctgcaggtcgcggcagcc
cggcaggaagagagcggccagggcatcgctcgcctctcgcgcggttcgctctcggcgatc
ggcgcgatggaaggcgacgtactcgaattgacgggcaagtcggtaactgtcgcccgcgcg
gtcctcgcctatgccgaggacgaaggcctcgaagtcatccgcctcgacggcctccagcgc
ggcaatgccgaagtcggctcgggcgatcacgttaccgtgcgcaaggccgaatcccgcccg
gcgcagcgcgtggtcttcgcccccgcccagaaggacatgcgccttcagggccccccggcc
gcgctcaagcgcaacttcttccagcgcccgatggtgcagggcgatctcgtcgccaccacc
ggccagcagcaggtcgcggacattcccccgcagcttcgccgcatgttcaatgcgccggcc
tatgcgctgacgcagatccgcctcaacgtcgtctccacgacgccgcgcggcatcgtccac
atcgacgagaacaccgaagtggaactgcgcgagaccttcgaggaagcgcacgacgcccgc
ggcgacgtcaactatgacgacgtcggcggcatgagcgacaccatccgtcagctgcgcgag
atggtggaactgccgctgcgttatcccgaactgttcacccgcctcggcgtcgccccgccg
aagggcgtgctgctccacggcccgccgggcaccggcaagacccgcctggcacaggccgtg
gcgaacgagagcgaggccagcttcttctcgatcaacggtcccgagatcatgggatcgggc
tatggcgagagcgagaaagcgctgcgcgaagtcttcgaggaagccaccaaggccgcgccc
gcgatcatcttcatcgacgagatcgattcgatcgcgcccaagcgcagccaggtgcacggc
gaggcggaaaagcgcctcgtcgcccagttgctcacgctgatggacgggctcaacagccgc
gcccacgtcgtcgtcatcgccgccaccaaccggcccgatgccatcgacgaggcactgcgc
cgtcccggccgcttcgaccgcgaaatcgtgatcggcgtccctgacgaggccggccgccgc
gagatcatcggcatccacacgcgcggcatgccgctgggcgacaaggtggacctgggcgag
cttgcccgcaccacgcacggcttcgtcggggccgacctggccgcacttgcccgcgaagcg
gcgatcgaggcggtgcgccggatcatgccccggctcgacctcgaggcccgcaccatcccg
cccgaagtgctggaagacctgcaagtgatccgcgaggacttcgtggccgcgctcaagcgc
gtccagccttcggccatgcgcgaggtcatggtgcaggttcccaatatcggctgggccgac
atcggcggactggacgaagcgcaactcaagctcaaggaaggcgtcgagcttccgctcaag
acgcccgaagccttccacaagctgggtatccgtccggccaagggcttcctcctctacggc
ccgcccggcaccggcaagacgctgctcgccaaggccgttgccaaggaggccgaggccaac
ttcatctcgatcaaatcgtccgacctcctctcgaagtggtacggcgagagcgagcagcag
atcgcccgcctcttcgcccgcgcccgccaggtcgcgccctgcgtgatcttcatcgacgag
atcgacagcctcgtgcccgcacgcggcatgggcggcggtggcggcgaaccgcaagtcacc
tcgcgcgtggtcaacacgatcctcgccgagatggacgggatggaggaattgcaatcggtc
gtgctgatcggcgccaccaaccgcccggcccttgtcgatccggcgctgctgcggccgggc
cgcttcgacgaactggtctatgtcggcaccccggacgaggccgggcgcgagcatatcctc
ggcatccacaccggcaggatgccgctggcggacgacgtctccctgcatgacatcgccgcg
cggaccgagcgcttcaccggcgccgatctcgaggacgtggtgcgccgtgccggcctcatc
gccatccgcaagcgcggagccgaagtggagcaggtccgccgcgaggacttcgaggacgcc
ctcgaagacagccgcgccaccgtgaccgaggaaatggaggccgagtacgagcgcatgaag
ggcgaactcaagaagcgggccatggaagtgatcccgatcggcttcatcgcccccggcatg
gtcgaatcccgccgcgaaaagaagcacggcgattga
DBGET
integrated database retrieval system
