Natrarchaeobaculum sulfurireducens AArc-Mg: AArcMg_2075
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Entry
AArcMg_2075 CDS
T05593
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nag
Natrarchaeobaculum sulfurireducens AArc-Mg
Brite
KEGG Orthology (KO) [BR:
nag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nag03016
]
AArcMg_2075
Enzymes [BR:
nag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AArcMg_2075
Transfer RNA biogenesis [BR:
nag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AArcMg_2075
Prokaryotic type
tRNA splicing ligases
AArcMg_2075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXR82073
UniProt:
A0A346PRC8
LinkDB
All DBs
Position
complement(2113943..2115436)
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AA seq
497 aa
AA seq
DB search
MGVAVGDSCMSNLTFEANGITLEQVREHVWEIPQEGEMRVPARVLASESLLEEISEDKTL
EQLKNTTHLPGITNYAICMPDGHQGYGFPVGGVGAIDAENGCISPGAVGYDINCGVRMMK
TNLTYDELRGNEAELVDSLFANVPSGLGGGGIVEADIDTVDEILARGVDWALEHGHAVEE
DLLHCEDEGMREEADPSKVTQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGEAYGL
EEDQIVVLIHCGSRGLGHQTCNDYLRKIEKQHQGLLNQLPDKELAAAPAGSQLAEDYYGA
MNAAINFAWVNRQLIMHRTRKVFERVFDRSWEEMEMHLLYDVAHNIAKKETHIVDGEERD
LYVHRKGATRAFPAGHPDVPKAYRDVGQPVIIPGSMGAGNYVLRGGEHSMERTFGSTAHG
AGRLMSRTQAKNEFWGGDVQQQLEEQDKIYVKAQSGATVAEEAPGVYKDVDEVVSVSDDL
GIGDKVARTFPVCNIKG
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgggcgtcgcagtcggagactcctgtatgagtaacctcacgttcgaggcaaacggcatc
acgctcgagcaggtgcgtgaacacgtctgggagatcccccaggaaggagagatgcgcgtc
cctgcgcgcgtccttgcgagcgagtccttgctcgaggagatttccgaggacaagaccctc
gagcaactgaaaaacacgacccatctgccggggatcacgaactatgcgatctgtatgccc
gacggccaccaggggtatggctttccagtcggaggggttggcgcgatcgacgccgagaac
ggctgcatttcgccgggcgcggtcggctacgacatcaattgtggcgtcaggatgatgaaa
acgaacctgacctacgacgagctccgggggaacgaagcggaactcgtcgactcgctgttc
gccaacgttccctcgggactgggtggcggtggcatcgtcgaggccgatatcgacaccgtc
gacgagatcctcgcccgcggggtcgactgggcgctcgagcacggtcacgccgtcgaagag
gacctgctacactgcgaggacgaggggatgcgcgaggaggcagacccctcgaaggtcact
cagaaggcgaaagaccgcggaaagaaccagatcggttcactcgggtcggggaatcacttc
ctcgaggtccagcgcgtgaccgacgtcttcgacgacgaggtgggcgaggcctatgggctc
gaggaggaccagatcgtcgtcctgatccactgcggctcgcgtggactgggccaccagacc
tgcaacgattacctgcgcaagatcgaaaaacagcatcaggggctgttgaaccagttgccg
gataaagaactcgcggccgcgcccgcgggctcgcaactcgcggaagactactacggggcg
atgaacgcggcgatcaacttcgcatgggtcaaccgccagctgatcatgcatcgcacgcga
aaggtcttcgagcgggtgttcgatcggtcctgggaggagatggagatgcacctgctgtat
gacgtggcccacaacatcgcgaaaaaagagacgcatattgtcgacggcgaagagcgcgac
ctctacgtccaccgcaagggggcgacgcgggccttcccggcagggcatcccgacgtcccg
aaggcctaccgcgacgtgggccagcccgtgatcatccccggcagcatgggcgcgggcaac
tacgtccttcgaggtggcgagcactcgatggagcggacgtttggctcgacggcccacggc
gcgggacgcctgatgagtcgcacgcaggcgaaaaacgagttttggggcggcgacgtccag
caacagctcgaagagcaggataagatctacgtcaaagcccagtcaggcgcgaccgtcgcc
gaggaggcccccggcgtctacaaggacgtcgacgaggtcgtcagcgtctcggacgacctc
ggcatcggcgacaaggtcgcccggacgttccctgtctgtaacatcaagggctaa
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