KEGG   Nocardia arthritidis: F5544_37415
Entry
F5544_37415       CDS       T06735                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
nah  Nocardia arthritidis
Pathway
nah03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nah00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F5544_37415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nah03019]
    F5544_37415
   03009 Ribosome biogenesis [BR:nah03009]
    F5544_37415
Enzymes [BR:nah01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     F5544_37415
Messenger RNA biogenesis [BR:nah03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     F5544_37415
Ribosome biogenesis [BR:nah03009]
 Prokaryotic type
  rRNA helicases
   F5544_37415
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 UvrA_inter Cas3-like_C_2 HEM4 adh_short
Other DBs
NCBI-ProteinID: QIS15310
UniProt: A0A6G9YQB7
LinkDB
Position
8339247..8341022
AA seq 591 aa
MSTNEVDSVPGDENQETSGPSFADLGIDDRILAAIADVGYESPSPIQAATIPPLLEGHDV
VGLAQTGTGKTAAFAIPILMGIQASGKSPRALVLAPTRELAIQVAEAFGRYAAHLPGIHV
LPIYGGQSYGVQLSGLRRGAQVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGF
QEDVERILADTPADKQVALFSATMPSAIRKISKQYLREPVEITVKAKTATNTNITQRWVQ
VSHQRKLDALTRILEVESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQAQRER
TIGQLKAGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAL
LFVAPRERHLLKSIERATRHPLTEMQLPSVEDVNAQRVTKFGDTITENLASANVALFRKL
IEDYEREHNIPLVDIAAALAVGSYDGDNFFMEPEPEPERRERVPRERPARRFEDEERSHH
RGTGAELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPAHLPA
ETLEALRRTRISGVLIQLQLDQGPPQHRTLSRGPRRDRDSVKRFERRKPRS
NT seq 1776 nt   +upstreamnt  +downstreamnt
atgagtaccaatgaggtcgacagcgttcctggcgacgagaaccaggagacgtccggcccc
tccttcgccgatctcgggatcgatgaccgcatcctcgcggccatcgccgatgtcggctac
gaatcgccgtcgccgattcaggccgccaccattccgccgctgctggagggccacgatgtg
gtcgggctcgcgcagaccggcaccggcaaaaccgcggcattcgccatcccgatcctgatg
ggaatccaggcgtcgggtaaatccccccgcgccctcgtgctcgcgccgacccgcgaactc
gcgatccaggtcgccgaggcgttcggccgctatgccgcacatctgcccggcatccatgtg
ctgccgatctacggcggccagagctacggtgtgcagctttcgggtctgcgccgcggcgcg
caggtggtggtcggcacgcccggtcgcgtcatcgaccatctggagaagggcacgctcgac
ctctcgcagctgcagtacctggtgctcgacgaggccgacgagatgctgaagatggggttc
caggaggatgtcgagcgcatcctcgccgacaccccggcggataagcaggtcgccctgttc
tcggcgacgatgccgtcggccatccgcaagatctccaagcagtacctgcgcgagccggtg
gagatcacggtcaaggccaagaccgccaccaacaccaacatcacccagcgctgggtgcag
gtgtcgcatcagcgcaaactcgacgcgctcacccggatactcgaggtcgagtcgttcgag
gcgatgatcatcttcgtgcgcaccaagcaggccaccgaggagttggccgaaaagcttcgg
gcgcgcggtttctcggcggccgccatcaacggcgatatcgcgcaggcgcagcgggagcgg
accatcggccagctgaaggcgggcgcgctggacatcctggtggccaccgatgtcgccgcc
cgcggtctcgatgtggaccgcatctcgcatgtggtgaactacgacatcccgcacgacacc
gagtcatacgtgcatcggatcgggcgtacgggccgggccgggcgcagcggcgaggcgctg
ctgttcgtcgcgccgcgggagcggcacctgctcaagtcgatcgagcgggccacccggcat
ccgctcaccgaaatgcagctgccgagcgtcgaggacgtcaacgcgcagcgggtgaccaaa
ttcggcgacaccatcaccgagaatctggcatcggcgaatgtcgcgctgttccgcaagctg
atcgaggactacgagcgcgaacacaacattccgctggtggatatcgcggcggcgctcgcg
gtcggatcgtacgacggcgacaacttcttcatggagccggaaccggaaccggaacgccgg
gaacgggttccgcgggagcgtccggcccgccgcttcgaggacgaggagcggtcgcatcac
cgcggcaccggcgcggagctggcgacctaccggatcagcgtcggcaagcggcaccgcgtg
gtgcccggcgcgatcgtcggcgccatcgccaacgagggcgggctgcgccgcagcgacttc
gggcatatcagcatccggcccgaccacagtctggtcgaactgcccgcgcatctgccggcg
gaaacgctggaagcattgcgccgcaccaggatcagcggtgtactgattcagctgcaactc
gatcagggaccgccccagcaccgcacgctcagccgcggcccgcgccgcgaccgcgacagc
gtcaagcgattcgaacggcgcaagccacgctcttga

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