Nocardia arthritidis: F5544_39440
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Entry
F5544_39440 CDS
T06735
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nah
Nocardia arthritidis
Pathway
nah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F5544_39440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nah03400
]
F5544_39440 (mfd)
Enzymes [BR:
nah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F5544_39440 (mfd)
DNA repair and recombination proteins [BR:
nah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F5544_39440 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
DUF3638
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QIS15707
UniProt:
A0A6G9YRI6
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All DBs
Position
complement(8761364..8764978)
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AA seq
1204 aa
AA seq
DB search
MPNRPPLAGLAAAASADTALQTVAGLIGKSTVELVAPSAVRPFVAHTIAASKPLVVVTAT
GREADDLTVELTEILGAAVAQFPSWETLPHERLSPGADTVGRRLAVLRRLAHPEDEVFPE
PLRVVVTTVRSLMQPMAAGLGDIAPIVLRVGAQFDFDELLTRLVEFAYTRVDMVGKRGEF
AVRGGILDLFPPTADHPVRVEFWGDEVTELRPFAVADQRSLTDLEVDLVVAPPCRELLLT
PAVRDRAAEVAIENAADAALVEMLEKLAEGIPVEGMEALLPVLQPGELKLLTEVLPTGTH
VLLCDPEKIRTRAADLVRTGEEFLEASWTAASFGGAAPLGGHGLDLAASAYRPLPDIHAS
ADRQGLPWWTLSPLTSGDPAEVVLPVLAGPAARGSDELVATIFASLRAHVSTGGRAVVVV
AGHGTAQRIQERLGDADVPAAVLAAGAEPQPGLVGVLCGSLHDGLIFDDAGLVVVAESDL
TGNRVTAPGDGKRLPAKRRNQVDPLALNAGDMVVHDQHGIGRFVEMIERTVGGARREYLV
IEYAPSKRGQPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWANTKRKARKAVREIAG
ELVQLYAARQAAPGHAFGPDTPWQQEMEDAFAFTETADQMTAIAEVKSDMEKPVPMDRVV
CGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVSGFPVTVKGLSRF
TDPAESRAVLEGMADGSVDIVVGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKALR
THVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYNDKQVTAAIRREL
LRDGQIFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMHEDMLEQTVQGFWQREFDVLV
CTTIIETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETA
YDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEAY
RAAADGKPITVEEPKEVRIDLPVDAHIPPDYIASDRLRLEAYRKLAAAQDDPALAAVVDE
LVDRYGPLPVEVGRLVSVAKLRLLAREYGVTEIAVTGTTLKISPLLSLPDSKQLRLKRLY
PSAGYKAASGVVQLPLPRVEDSVGAERVRDVVLLQFVADLLLALDGKAQGAVDLTVATEV
SGAR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcccaatcgtcccccgctggccggactcgccgcggccgcgagcgccgataccgcgcta
cagacggtcgccgggctgatcggaaaatccacggtcgaattggtggccccctcggcggtg
cggccgttcgtcgcgcacaccatcgccgcgagtaaaccgctggtcgtggtgaccgccacc
ggtcgtgaggccgacgatctgaccgtcgagctcaccgaaatcctcggcgcggcggtcgcc
cagttcccgtcgtgggagacgctgccgcacgaacggctctcgcccggcgcggataccgtg
ggccgcaggctcgcggtgctgcgcaggctcgcgcatccggaagatgaggttttcccggag
ccgctgcgggtggtggtgacgacggtgcgctcgctgatgcagccgatggccgccggcctc
ggcgatatcgcgccgatcgtgctgcgcgtcggcgcacagttcgatttcgatgaattgcta
acgcgcctggtcgaattcgcgtatacgcgggtcgatatggtcggcaagcgcggcgagttc
gcggtgcgcggcggcatcctcgacctgttcccgcccaccgcggatcatccggtgcgcgtc
gagttctggggtgacgaggtcaccgagctgcggccgttcgcggtcgccgatcagcgctcg
ctcaccgatctcgaggtggacctcgtcgtcgcgccgccctgccgggaactgctgctcacg
cccgcggtgcgggaccgggccgccgaggtggccatcgagaacgcggccgacgcggccctg
gtcgaaatgctggagaagctggccgagggtattccggtcgagggcatggaggcgctgctg
ccggtattgcagccgggtgagctcaaactgctcaccgaggtgctgcccaccggaacgcat
gtgctgctgtgcgatccggagaaaatccgcacccgcgcggcggatctcgtgcgcaccggc
gaggaattcctggaggcgtcgtggaccgcggcctccttcggcggcgcggccccgctcggc
ggtcacggactcgacctggcggcctcggcgtatcgcccgctgcccgatatccacgccagc
gccgaccggcaaggcctgccgtggtggacgctgagcccgctcacctcgggtgatccagcc
gaggtcgtgctgccggtgctggcgggcccggccgcgcgcggctccgacgaactcgtcgcg
acgatcttcgcctcgctgcgtgcgcacgtctcgaccggcggccgcgcggtggtcgtcgtc
gcgggacacggtacggcacaacgcattcaggaacggctcggcgatgcggacgtcccggcc
gcggtgctggcggccggcgccgaaccgcagccaggtctggtcggcgtgctgtgcggctcg
ctgcacgacggcctgatcttcgacgacgccggtctcgtcgtcgtcgccgaatccgatctc
accggcaaccgggtcaccgcgccgggcgatggcaagcggctgcccgccaagcggcgcaac
caggtggatccgctcgcgctgaacgcgggcgacatggtggtgcacgatcagcacggcatc
gggcgcttcgtcgagatgatcgagcgcaccgtcggcggcgcccggcgcgaatacctcgtc
atcgaatacgcgccgagcaagcgcggccagcccggcgaccggttgttcgtcccgatggaa
tcgctcgaccagctctcccgctacgtcggcggcgagatgccgagcctgtccaaactcggc
ggctccgactgggcgaatacgaaacgcaaggcgcgcaaggccgttcgcgagatcgccggt
gaactggtgcagctctacgcggcgcggcaggcggcgcccggccacgccttcggtccggac
accccgtggcagcaggagatggaggacgcgttcgcgttcaccgaaaccgccgaccagatg
accgccatcgccgaggtgaaatccgatatggagaagccggtcccgatggaccgggtggtg
tgcggcgatgtcggctacggcaagaccgagatcgcggtgcgcgccgcgttcaaggcggtg
caggacggcaagcaggtggtggtgctggtgccgacaaccctgctggcacaacagcatctg
cagacgttcaccgagcgggtcagcggattcccggtcaccgtgaaggggttgtcccgcttc
accgatcccgccgaatcgcgcgccgtactggaggggatggccgacggctcggtggatatc
gtcgtcggaacgcaccggctgctgcagaccggcgtgcggtggaaggacctggggctggtc
gtcgtcgacgaggaacagcgcttcggcgtcgaacacaaggagcacatcaaggcgctgcgc
acgcacgtcgacgtgctcaccatgtccgcgacgccgattccgcgcaccctggagatgagc
ctggcaggcatccgcgagatgtcgaccatcctcaccccgccggaggagcggcatccggtg
ctcacctacgtcggcgcgtacaacgacaagcaggtcaccgccgccatccggcgtgagctg
ctgcgcgacgggcagatcttctacgtgcacaaccgggtctcctcgatcgacaaggccgcc
aagcgaattcgcgatctggtgcccgaggcgcgggtggtggtcgcgcacggtcagatgcac
gaggacatgctcgagcagaccgtgcagggtttctggcagcgcgaattcgacgtcctggtg
tgcaccaccatcatcgagaccggcctcgatatctccaatgcgaatacgttgatcgtggaa
cgcgcggacgcgcttggtctttcgcagctgcaccagctgcgcggccgggtcgggcgcagc
cgggagcgcgggtacgcgtacttcctgtacccgccggagaagccgctcaccgagaccgcc
tacgaccggttggccaccatctcgcagaattccgacctcggcgcgggtatggcggtggcc
atgaaggatctcgaaatccgcggcgccggaaatgttctcggcgccgaacagtccggccat
gtggccggggtcggattcgatctgtacgtgcggctggtgggcgaggcggtggaggcgtat
cgcgccgccgccgatggcaagccgatcaccgtcgaggagcccaaggaggtgcgtatcgac
ctgccggtggacgcgcacatcccgcccgactacatcgccagcgaccggctgcgtctggag
gcgtaccggaaactcgctgcggcgcaggacgatccggcgctggccgcggtggtcgacgaa
ttggtcgaccggtacggcccgctgccggtggaggtgggcaggctggtctcggtggccaaa
ctgcggctgctggcccgcgaatacggcgtcaccgaaatcgcggtcaccggaacgacattg
aagatttcaccactgttgagcctccccgactccaaacagctgcgcttgaagcggctctat
ccgagcgcgggctacaaggcggcaagcggggtggtgcagctgccgctgcctcgggtggag
gacagcgtcggcgccgagcgggtgcgcgatgtggtgctgctgcaattcgtcgccgacctt
ttgctggcgttggacggaaaagcccagggggcagtcgatctcacggtggcgaccgaggtt
tccggggcgcgatga
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integrated database retrieval system
