Necator americanus (New World hookworm): NECAME_05647
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Entry
NECAME_05647 CDS
T04867
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nai
Necator americanus (New World hookworm)
Pathway
nai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NECAME_05647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nai03021
]
NECAME_05647
03019 Messenger RNA biogenesis [BR:
nai03019
]
NECAME_05647
Transcription machinery [BR:
nai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
NECAME_05647
Messenger RNA biogenesis [BR:
nai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
NECAME_05647
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_UBZ
Zn_ribbon_3
Zn_ribbon_ISL3
Pfc11_Clp1_ID
DAP3
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
25345679
NCBI-ProteinID:
XP_013290600
UniProt:
W2SFS4
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MSSAEEAAKEYKLTLDELVNNNKTQINLLTILAEDYQQHAAAIVETIEKQIFTVPKPQKL
PIMYVADSIMKNIGNSDYKELFAKIIVRLFLHVFLEVKRFSRPLLLGIIGILFQGDEAVR
SALYRLRQTWGDVFNRSKLYQLDIKVNEIDRAWPLTALKQGGKPPVITSAPSNPTSSLPI
APALKQIHGKVHVNPKFIQNNGQNTASEATVKKSAKSDVPKRVRFKTEELKEPKKELIDE
LLELPPVRGCDRAIKSEPDEPTPPARLSPQPPKRKAALSAVHRLDSKRKRSPPKSFDEDL
RSLPGPAAKDGTVVKPTAILGSHAFTAHAKSSLSRVQQAQLPLPGRSSPPAATNGLLMPP
TQVSVVAPTATTLPMPPTFHGQSTVAGPGGLPMPPNYHPPVAPSTSSLALPPNYVAPSTA
PVASLAGPSALPMPPNYLPPTSSSANLPMAPPVLGPTGFPMPPGYRAPTPAVVTTNAPTG
TVIPSTASALPQAPSGSNAVITTEAPVKLDIPSNNRIFVDGKAHEVEYVNDIAVIERNGL
PHKIYFAGTPRNVIIDGVPHLLHFGETKAVIIDGQEHILRFGAPSRELYLNNFAFKGQFG
GAPIVATINGRRHEIRLAGPAPDVKINPDPAYELTAELNRIRANKSENKQEPSLDPFNLL
KKLQQSGFLKKPEPAPAPPPNPSTRDRLRHTTMMLRDTTPPIPSEHSVSIIERRAVPAAP
LKEFNMRILKMYVDIAYHLGFDINQISCFSVYSRYDSVVDALHEKQQNACPHCGQRMELR
GERYERHLDWHVKRNLKTFEKASTCRPWYASSKEWLKSEEEEETGISATSCTTETMEENL
PVIAVSAREAINKSCAVCCEDFEEYCDEDDDGVWKLKDCVIVNNQAYHSACVQDASMVED
TPSQESSESCDTKSFVKDTKVLNLIEMS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcagaggaggccgctaaggagtataagttaacgctggatgagctagtgaac
aacaataaaacacaaattaacctgttaacgatactagctgaagattatcagcaacacgca
gctgcgattgtggaaacgatagaaaagcagatatttaccgtgccaaaaccacagaagttg
ccaattatgtatgttgccgattcgatcatgaagaacatcgggaatagcgactataaggag
ttgttcgcaaaaataattgtccgactctttcttcatgtgttccttgaggtaaagagattc
tcacgcccgctgctgctcggaattattggcattttgtttcagggtgatgaagcagtgcga
tcggcgctgtaccgcctgcgtcaaacgtggggtgacgtgttcaatcgatcgaagctgtat
caactagacatcaaagtgaacgaaattgatcgagcatggcctctcactgcgttgaagcaa
ggcggaaagccccctgtcatcacaagtgcaccatcgaaccccacttcatcacttccaatc
gcacctgcactcaagcagatacatggcaaagttcacgtcaacccaaagtttatacagaac
aacggacaaaatacagcgagtgaagctactgtcaagaaaagcgccaagtccgatgtaccg
aaacgcgtacgcttcaaaactgaagaacttaaagagcccaaaaaagagttgatcgatgag
ttattggaactgccaccggtgagaggatgtgatcgtgcgatcaaatcggaacctgatgaa
cctacacctccagctcgtctcagtccacagccgccaaaaagaaaggcagctctgtccgct
gtacatcgtctagattcgaaacggaaacgctctcctcccaaatcatttgacgaggatcta
aggtcgctgcccggtccagctgcaaaagatggaactgttgtaaagccaactgccattctt
ggatcgcatgccttcactgctcacgcgaagtcttctctgagtcgagtacagcaggctcaa
ctccctctcccaggacgatcttcaccacctgctgctacgaatggacttttaatgccacct
acgcaagtctctgttgtagcacctactgctactactcttccaatgcctccaacattccac
gggcaatccacagtggccggcccaggaggtttaccgatgcctccaaattaccatccccct
gttgctccatccacatcttctctagctctgccgccaaactatgtagcaccatccaccgct
cctgttgcttctctggctgggccttctgcgctcccaatgccgccgaattatcttcctcct
acgtcttcaagtgcgaatttacctatggcccccccggttctgggaccaactggcttcccc
atgcctccaggatatcgagcaccaactccagcggttgttacaactaatgcgcctacggga
actgtcatcccttctactgcaagtgcactgcctcaggcaccttcaggatcaaatgcggtt
ataaccactgaagctccagtaaagcttgatattccgtcgaacaatcgcatatttgttgat
ggaaaagcgcatgaggtggaatacgttaatgatatagctgtgatagagagaaatggtcta
cctcataaaatttattttgctggaactcctcgcaacgttataatagatggcgttcctcat
cttctgcattttggtgaaaccaaggcagttataatcgatggtcaagagcacattctccgc
tttggtgctccaagtcgtgaactttaccttaacaactttgcctttaaaggacaatttggg
ggtgctcctattgttgctacaataaacggtcgacgacatgaaattcggttggctggtccc
gcacctgatgtgaagatcaatcctgatcctgcctatgaactgacggctgaattgaatcgg
atacgggcaaataaaagtgaaaataagcaagagccttcattagatccattcaatcttcta
aagaaacttcaacaaagcggatttttgaaaaagcccgagcctgctccagcacctccgccc
aatccttcgactcgagatcgtctcagacacacaacaatgatgcttagagacactacgccg
ccaattccaagcgagcacagtgtgagcataatagagcgacgggctgttcctgctgcacct
ctgaaagagttcaatatgaggattcttaaaatgtatgttgacatagcttaccatttgggg
ttcgatatcaatcagatatcctgcttttccgtttatagtcgatacgatagcgtggtggat
gccctccacgagaaacagcaaaacgcttgtccacattgtggtcagcgaatggaattacgc
ggagagaggtacgaacgacacttagactggcatgtgaagagaaatttgaaaacatttgaa
aaggccagcacatgtagaccatggtatgctagtagcaaggaatggttgaaaagtgaagag
gaagaagaaaccggcattagcgctacaagctgcactactgaaacaatggaggaaaatctg
cctgtaatagcagtttcagctcgtgaagcaataaacaagagttgcgctgtgtgttgtgaa
gatttcgaagagtattgtgatgaggacgatgatggtgtgtggaaactcaaagactgtgtt
atagtaaataatcaggcgtatcactcggcctgtgtccaagatgcatcaatggttgaagac
acgccatcgcaagagtcgtcagaatcatgtgatacaaaaagttttgtaaaggataccaag
gtgttaaatctgatagaaatgagttga
DBGET
integrated database retrieval system
