Necator americanus (New World hookworm): NECAME_06651
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Entry
NECAME_06651 CDS
T04867
Name
(RefSeq) DSHCT domain protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nai
Necator americanus (New World hookworm)
Pathway
nai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NECAME_06651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nai03019
]
NECAME_06651
03041 Spliceosome [BR:
nai03041
]
NECAME_06651
03009 Ribosome biogenesis [BR:
nai03009
]
NECAME_06651
03016 Transfer RNA biogenesis [BR:
nai03016
]
NECAME_06651
Enzymes [BR:
nai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NECAME_06651
Messenger RNA biogenesis [BR:
nai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
NECAME_06651
Spliceosome [BR:
nai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
NECAME_06651
Complex C
U4/U6.U5 tri-SnRNP related factors
NECAME_06651
Ribosome biogenesis [BR:
nai03009
]
Eukaryotic type
Pre-60S particles
Helicases
NECAME_06651
Transfer RNA biogenesis [BR:
nai03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
NECAME_06651
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
Helicase_C
DEXQc_Suv3
Helicase_dom4_arc
nSTAND3
Motif
Other DBs
NCBI-GeneID:
25346683
NCBI-ProteinID:
XP_013307074
UniProt:
W2TUY7
LinkDB
All DBs
Position
Unknown
AA seq
1052 aa
AA seq
DB search
MDEDDLFGAFEESGGVETAPAPAPTPGEARDKTDKMALLDERRREEARQQAAALLSSMLQ
GDCGDTIEPEKKKARVEADDVLEQIQETFDKTITVHTIRTDNENCTHEVALPPDMPFEPL
TPRDSAPAKSYPFQLDAFQREAITCIENSQSVLVSAHTSAGKTVVALYAIAQCLRDKQRV
IYTSPIKALSNQKFRELEEEFGDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEVMRE
VGWVVFDEIHYMRDKGKFFFVSSSSTVAYKIYFAERGVVWEETIILLPDNVHHVFLSATI
PNARQFAQWVCWLHRQPVHVVYTDYRPTPLQHFIFPVGGEGLYEVVNIQGQFREDKFMQA
MSGLAGLGDQAAGGIQRGRKGGMKTDSNVVKIIRTIKERDMLPCIIFSFSRKECEAYALS
LKDMDFNDDEEKKLVREIYNSAIDLLSDEDKKLPQIGQILPLLLRGIGVHHSGLLPILKE
TVEILFGEGLLKTLFATETFSMGLNMPARTVLFTSARKFDGADNRWITSGEYIQMSGRAG
RRGKDDRGLVILMVDHKMSSEDAKQIIKGATDPLNSQFRLTYNMVLNLLRVEGVNPEFML
ERSFYQFQNYDAIPDLKRKVREKAAEVEAMRIEHERDITAFFDMEKQIANLQATISKTIC
LPKYLVPFLHAGRMLHIVAGTRDFDWAVLVNFHRKTNVDDSTQMVYILDVFMGFKSDSAD
ENHSLAQLQPITDGAYASWDVISMTLDCVQEISAVRLKLPPKLDSNTKGVIEHMIKSVKQ
RFSKIPLLHPINDMRINEPAFVHAVEKVAELEQRSQEHPLRKNKDFELIRKQYTTKDEKK
RELKRLEAELRKAQSVLQLDELAQRKRLLRRLEYSDKSDIITEKGRCACELSAADELMLT
EMLYGGVFTDLSPPQLAALLSCFVFQENAKSPKLADELSGCLRKLHEYARRIAKLSIECK
LDVIEDKYVESFKPGMMDVVFQWVNGSSFSEVMKNTDIFEGSIIRCLRRLEEVLREMVNA
AKSMQNQTLEEKFEEARVRIKRDIVFAASLYL
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggacgatttattcggagcttttgaagagagtgggggtgttgaaactgcgcca
gcaccagcaccaacgccaggagaagccagggacaaaacggacaaaatggctttgctcgat
gaaagacgtcgagaagaagcacgtcagcaggcggcagctttattaagttccatgttacaa
ggagactgtggtgataccattgaacctgagaagaaaaaggctagggtggaagccgatgat
gtgctggagcaaatccaggaaacatttgataagacgataacagttcatactattcgcact
gataatgaaaattgcacccacgaagtagcattaccaccggacatgccatttgaaccactc
actcccagggattctgcaccagcgaaaagctatccttttcaactagacgcgttccagcgt
gaagctattacttgcatcgagaacagtcagtctgttttagtgtctgcccacacgtcggct
ggaaaaactgtggttgctctatatgcaattgcccaatgtcttcgggataagcaacgtgtg
atttacacttcaccaatcaaggcgttgtcaaatcagaaattcagagaactcgaagaagag
ttcggtgacgtcggtctgatgacaggtgatgtcaccctaaatccggatgcgtcctgtctt
gtgatgactactgaaatccttcggtctatgctctatagaggttctgaagtaatgagagag
gtaggatgggtcgttttcgacgaaatccattacatgcgagataaaggcaagtttttcttc
gtatcatcctcatctacagtagcctataagatctattttgcagagcgtggtgttgtttgg
gaagaaaccataattttattgccggataatgtacaccacgtgttcctctctgcgactatt
cctaatgctcgacaatttgcacaatgggtatgttggttgcacagacaacctgtacatgta
gtttacacggattatcgtcctacccctcttcaacatttcatttttcctgttggaggcgag
ggtctctacgaggttgtgaatatacagggtcaatttcgtgaagataaatttatgcaagct
atgagcgggttggccggcttgggagatcaggctgcaggtggcattcaaagaggtcgtaaa
ggaggaatgaagacggactccaatgtggtcaagatcattagaacgatcaaggaacgcgat
atgttaccatgcataatattctcgttcagccggaaggagtgtgaagcatacgcactttca
ctcaaagatatggattttaatgacgatgaagaaaagaaattggtgcgtgaaatatacaac
agtgctattgatctccttagtgacgaggataaaaagttaccccagataggacagattctt
cctttgttacttcgcggaattggggtacatcattctggtttgctacccatactcaaagaa
actgtcgaaatactattcggagaaggattgctgaagaccttgtttgcaactgagacgttt
tcaatgggtttaaacatgcctgcacgaacagttctgttcacatcggcccggaagtttgat
ggtgctgacaacagatggatcacttctggagaatatatccaaatgtcaggaagagctggt
cggcgtggaaaagacgatcgaggtcttgttatattaatggtagatcataagatgagcagt
gaagatgctaagcagattataaagggagcaacagatcctttaaattcccagtttcgcctt
acatacaatatggtgctgaatctactacgagttgaaggagtgaatcctgagttcatgttg
gagcgctctttttatcaattccagaactacgatgctattcctgatcttaagcgaaaagtg
agagagaaagctgcagaagttgaagccatgcgcattgaacatgagcgcgacataaccgca
tttttcgatatggaaaagcagatagcaaacctccaagcaactatcagcaaaaccatatgt
ttgccaaaatacttagttccgttcctgcacgcaggtagaatgctccatatcgtggctggg
actcgcgattttgattgggccgttctagtaaattttcacaggaaaacaaatgtcgatgat
agcactcagatggtctacattctagatgtgtttatgggtttcaaaagtgacagtgctgat
gaaaatcacagcttagcacagttgcaaccaattactgatggtgcatatgcaagctgggat
gtcatttcgatgactttggattgcgtgcaggaaatcagtgcggttcgattaaaacttcct
ccaaaacttgactcgaacaccaaaggtgtaatagagcacatgattaagagtgttaaacaa
aggttcagcaagattcctttgttgcatcctattaacgatatgcgaataaacgaacctgca
tttgtacatgcagttgagaaagtcgccgagttggaacagagaagtcaggagcatccgctc
cggaaaaacaaagatttcgagttaataagaaaacagtatacgaccaaggatgagaagaag
cgagaactgaaacggcttgaagcagaactgcgaaaagcacagtcagtgcttcaactggat
gaattggctcagaggaaacgccttcttcgtcgtcttgagtattccgataaatcggacatc
ataactgaaaagggacgttgcgcgtgcgagctgtctgccgcagacgagttgatgttaacg
gaaatgttatacggtggcgtattcactgacctttcgcctcctcagcttgcagctctcctc
tcttgttttgtattccaggagaacgcaaaatcgcccaaattggccgacgagttatccggt
tgcctacgaaaactgcatgaatatgcccgtcgaattgcaaagctgtcgatcgaatgcaaa
ctcgatgtcatagaagataagtatgtggagtcttttaaaccaggaatgatggacgttgtc
ttccaatgggtgaatggttcttccttctcagaggtgatgaagaacactgatatttttgaa
ggttcgattattcgctgtttacgacgactggaagaagttttaagagaaatggttaacgcc
gcaaaatcaatgcaaaaccaaactcttgaagaaaagttcgaagaggctcgtgtgcgcatc
aagagagatattgtattcgccgcttctttatatctctaa
DBGET
integrated database retrieval system
