Necator americanus (New World hookworm): NECAME_08047
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Entry
NECAME_08047 CDS
T04867
Name
(RefSeq) RNA helicase HRH1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
nai
Necator americanus (New World hookworm)
Pathway
nai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NECAME_08047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nai03041
]
NECAME_08047
Enzymes [BR:
nai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NECAME_08047
Spliceosome [BR:
nai03041
]
Complex C
Other components
Step II factors
NECAME_08047
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
PhoH
AAA_30
Flavi_DEAD
nSTAND3
T2SSE
SRP54
Zip
Motif
Other DBs
NCBI-GeneID:
25348077
NCBI-ProteinID:
XP_013304562
UniProt:
W2TJT5
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MDQLERLSLVSKVCTELDNHFGIKEKDVAEFIIDLATVNNTFDKFKKALDEQGLGEQFDD
SLVANLLRLIQHMLPKARKKGQENTSNSHKITLISDAKDEIKARLPALAMPNSNSGDMMS
QLENLMPKWKEEKEELEEEAKPDRSVSKHGSDRRRSDSKADSEKRKDHRRSSHRSRDERR
EGKKRSRSRSSSRDRYGKRRHVSDRDRRGRRDDSRERRDYDDRRSSKDWKRKDRDRDHRD
LPDTAEVGQIYSGRVVSIQSFGAFIQLEGIRQQVQGLCHISQLKNERVNAVADVLSRGEK
VKVKVLKIDNGKFSLSLKEVNQITGEDLNPQEASLSSDAVGVNELRNPEAPWANPEMSSD
RKDLVSSGTSKSRVRMSTPERWEWQQMIGAGVVTNMDRPDFDEESGVLRGEDEQSDGEDY
EVEIVEEEPEFLRGYGKGNQEIEPVKGALSKERRESKIQSQREKDAERNTGLRSNSTRIL
DPVQERNMDNDEDRGTMRRDKDMPEWMKHVTAGGKATYGRRTNLSIKEQRESLPIFNLKK
SLLQAMTDNQILVVIGETGSGKTTQITQYAVEAGFARKGRIGCTQPRRVAAMSVAKRVAE
EFGAKLGQEVGYTIRFEDCTSQDTIIKYMTDGMLLRECLVDPDLLSYSLIMLDEAHERTI
HTDVLFGLLKAAAKKRPDLKLIITSATLDAVKFSEYFFEAPIFTIPGRTFPVEILYTREP
ETDYLDAAHITVMQIHLTEPPGDILVFLTGQEEIDTSCEVLYERMKALGPDVPELIILPV
YGALPSEMQTRIFDPAPPGKRKVVIATNIAETSLTIDGIYYVVDPGFVKQKIYNPKSGMD
SLVVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLASTLLQL
KAMGINNLIDFDFMDAPPLDSMISALHQLHTLSALDGDGLLTKLGRRMAEFPLEPSLAKL
LIMSVELGCSDEVLTIVSMLSVQNVFYRPKEKQEQADQKKAKFHQPEGDHMTLLAVYNSW
KHHHFSQPWCFENYVQIRTLKRAQDIRKQLLGIMDRHKLDLVSCGRDVQRIQKAICSGFF
KNAAKRDQQDGYRTLVDGQNVFIHPSSALFQNQPEWVVYHELIMTTKEYMREVTAIDPRW
LVEFAPSFFKMSDSTKLSAFKKNQKIDPLFDKYADANAWRITRVKKKIYNPNR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggatcagttggagcgtttgtccttagtttctaaggtttgcaccgagttggataaccat
ttcggaataaaggagaaagacgtggcagaatttataatagatttggcgactgttaacaat
acatttgacaagtttaaaaaggcactcgatgaacaaggacttggggaacagttcgatgac
tctcttgtggcgaatctacttcgtcttatccagcatatgcttcccaaggccagaaaaaaa
ggtcaagaaaacacttcaaattctcataagatcacgctgatttctgatgccaaagatgag
atcaaggcaaggttgcctgctcttgccatgccgaacagtaactccggtgacatgatgagc
caactcgaaaacctaatgccaaaatggaaagaggagaaggaagaactagaggaggaagcg
aaaccagaccgaagcgtttctaaacacgggtctgataggaggaggagtgatagtaaagca
gatagtgagaagcgaaaagatcaccgtagaagttctcaccgaagcagagatgaacggaga
gaaggaaagaaacgatcaagatcgagatcatcttctcgtgatcgatacggtaaaagaaga
catgttagtgatcgagatagaagaggacggcgtgatgactctagagaaagaagagactat
gatgatcggcgatcaagcaaagactggaaaagaaaagatcgggatcgagatcatagggat
ctcccggacactgctgaagtgggccaaatctacagtggcagagtggttagcattcaatcc
tttggagcatttattcagctggaaggtatacgacagcaagttcaaggtctatgtcacata
tctcagctcaaaaacgaaagagtgaacgcagttgcagatgtccttagcagaggagaaaaa
gtgaaagtgaaggttttgaagatcgacaatggtaaattctcactttccttgaaggaagtg
aatcaaattactggagaagatctcaatccacaggaagctagtttatcatcggatgcagtt
ggtgtgaacgagttacggaaccccgaagcgccttgggcaaatcctgaaatgtcgtctgac
cgtaaagatttggtctcgtctggcacaagtaaaagtcgggttcgcatgtctactccagaa
agatgggagtggcagcaaatgataggtgcgggagttgtaaccaacatggatcgaccagat
tttgacgaggaatctggggtgctacggggcgaggatgagcaaagcgatggcgaggattat
gaagttgaaatcgtagaagaagaacctgaatttttgcgtggttatggaaaagggaatcaa
gaaattgagccagtcaaaggagctttgtcaaaagaacggagagaatcgaaaatacaatct
cagcgcgaaaaagacgctgaaaggaataccggtttgagatcaaatagcactcgaatcctt
gatccagtgcaagaaaggaatatggacaatgatgaagatagaggaactatgagacgagat
aaagatatgccggagtggatgaaacacgttactgctggagggaaggcaacatacggtaga
cgcactaacttaagcattaaagagcaacgcgagtcgctacctatcttcaatttgaaaaag
tctttgttgcaggccatgacggataatcagatcctggttgtcattggtgagacgggttca
ggaaaaactactcaaataacgcaatacgctgtggaggcaggttttgctcgaaaaggacga
attggctgtacacaacctaggcgagtagctgcaatgtctgtagcaaaacgcgtcgctgaa
gagtttggtgccaaacttggtcaagaggtcggatacaccattcgtttcgaggactgcact
agccaggacaccatcataaagtatatgacagacggtatgcttttgcgcgaatgtttggtg
gatccagacctactgtcatactccctcattatgctcgatgaggcgcacgagagaacgata
catacagatgtgttgttcgggttgctgaaagctgccgcgaagaagcggcccgacttgaaa
cttatcattaccagtgctactctcgatgccgtgaaattctccgaatactttttcgaagct
cctattttcactattcctggccggactttccccgtagagattttgtacaccagagagccg
gaaaccgactacctcgatgcagcacacattacagtgatgcagattcatctaacagaacct
cctggtgacattctagtcttcctcactggacaggaggaaatcgacacgtcatgtgaagtt
ttatatgaacggatgaaggctctaggaccagatgtgcctgaattaatcatcttaccagtg
tacggagcgttgccttcagaaatgcaaacacgaatttttgaccctgctccaccaggcaaa
cgaaaggtcgtcatagccacgaacattgctgagacgtcactgacaatcgacggcatctac
tatgtagttgatcctggtttcgtgaaacaaaagatatataatcctaaaagtggcatggat
tctttggttgtcactcccatcagtcaagcagcggcaaaacaacgagcagggcgtgcagga
agaacaggtcctggcaagtgctatcgcctctacactgaaagggcatatcgagatgagatg
ttgcctactcctgtccctgagattcaacgaacgaatctggcctcaactttgctgcagctc
aaggcaatgggaatcaataatctaatcgatttcgacttcatggacgctcctcctttggat
tcaatgattagtgccttgcaccagttgcacacactgtctgctttggatggcgatggatta
ttaacgaaacttggtcgaagaatggccgaattccccctggagccctcactggcaaaactg
ctcatcatgtcagtcgagttaggttgctctgatgaggtgcttaccatcgtctctatgctt
tcagtgcagaacgttttctatcggccaaaggaaaagcaagaacaagcagaccaaaagaag
gcgaaatttcaccaacctgaaggagaccacatgacgctactagcagtatacaactcatgg
aagcatcatcatttcagccagccttggtgttttgagaactacgttcaaattcgtaccttg
aagagagcgcaagatattcgtaagcaattacttggtataatggaccggcacaaattagac
cttgtcagttgtggtcgagatgtccaacgaattcaaaaagcaatatgttccggtttcttc
aagaacgctgcaaaacgagatcaacaagatggctatcgcacacttgtggatgggcagaac
gtcttcattcatccttcttcagctttattccagaatcagcccgaatgggttgtttatcac
gagctgattatgaccacaaaggaatatatgagagaagtaactgcgatcgatccacgatgg
ctcgtcgagtttgctccatcgttcttcaagatgagcgattcaaccaagctgtctgcgttc
aagaaaaatcagaaaatcgacccgctcttcgacaagtatgcggatgcaaacgcttggcgt
atcacgcgtgtcaagaagaagatatacaatccgaacagataa
DBGET
integrated database retrieval system
