KEGG   Necator americanus (New World hookworm): NECAME_09006
Entry
NECAME_09006      CDS       T04867                                 
Name
(RefSeq) zinc knuckle
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
nai  Necator americanus (New World hookworm)
Pathway
nai03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:nai00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    NECAME_09006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nai03021]
    NECAME_09006
   03019 Messenger RNA biogenesis [BR:nai03019]
    NECAME_09006
Transcription machinery [BR:nai03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     NECAME_09006
Messenger RNA biogenesis [BR:nai03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     NECAME_09006
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 RAWUL zf-CCHC zf-RING_2 zf-RING_5 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4_4 cwf18
Other DBs
NCBI-GeneID: 25349035
NCBI-ProteinID: XP_013302911
UniProt: W2TGF8
LinkDB
Position
Unknown
AA seq 488 aa
MIATRQLVSVYQQPTSTGMRLKIPLTMDDVIGGIDAEITDVEEALMHQIGAREVPFAGMD
KSGRGVCLKHVQGTCTMNLVCPLRHIVGDKAVVCKHWLRGPYCKHRHRRRMICPNYIAGF
CPDGMEECKFTHPSFALPAPENPVANNKRLFNHQIICHNCHERGHKATHCPHLPTQQAKQ
SDSNPMTNRATTTVQPVDLSLFPDKKSLSEVTCYKCGEKGHYANRCHKGALAFLSNTAHL
AQEQREKDEREGRYLPGAYMGQPSLNPRTGTVFQGYLIDATTVIDCLHTFCKSCLLTYFE
EEDNCCPTCEQLIHQSHPSHYVAFDRTMQDIVYKLVPGLLEAERKRRLEFLKNKKREAGE
TVEEDEEDTEKKDESPQGTNRCFEGEPGISHHRNDEHVIVSLIPGAPELPTPVRPIVRLS
GMATVNTLKRYLAQSMWSNMSRYSELDLFCNDELMGRDFSMRFIHLTRCRNKLKDEPLKL
VYRYHIDF
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgatcgccactcgacagcttgtttctgtttaccaacaaccaacgtcgacaggaatgcgc
ctgaaaatccctttaacaatggatgatgtcattggtggtattgatgcagaaattacagat
gtggaagaagcgcttatgcatcaaatcggtgccagagaggtaccctttgccggaatggac
aaaagtggccgaggtgtatgtttaaagcatgtgcagggcacatgtacgatgaatttggtc
tgtcctctccgacatattgttggagataaggccgttgtttgtaaacattggcttagagga
ccatactgtaagcatcgccatcgcagacgtatgatttgtcccaactatattgccggattt
tgtcctgatggtatggaagagtgtaagtttacccacccatctttcgcactgccagctcca
gagaaccctgtggcgaacaacaagcggttgtttaatcaccaaatcatctgtcacaattgt
cacgaacgtggccataaagctacacattgtccgcatttgccaactcaacaagctaaacaa
tccgattcgaatccgatgacgaaccgagcgacaaccaccgtgcaacctgttgatctctca
ctgtttcctgacaagaagagtttgtcggaagtaacttgttataagtgtggtgaaaaaggt
cactatgcgaaccgttgccacaaaggtgcgctggctttcctgtcgaacactgctcatctg
gcgcaagaacagcgagaaaaggatgaacgggaaggaagatacctcccaggagcgtacatg
ggtcagccgagcttgaatcccaggacaggaactgtttttcagggatatttaatagatgca
acgacggttatcgactgcttgcatacgttctgcaaaagttgtcttctcacctattttgaa
gaagaggacaactgctgcccaacgtgcgaacagctgattcaccaaagtcatccgagccac
tatgtggcattcgatcgtacaatgcaggacattgtgtacaaattagtccctggattactg
gaagcagagcggaagaggcgccttgaatttctgaaaaacaagaaacgagaagcaggggaa
actgttgaagaagatgaagaggacaccgaaaagaaggatgaatctcctcagggaacaaat
cgatgttttgaaggggagcctgggatttcgcaccaccgaaatgatgaacacgttattgtt
tcgttgattccgggtgctccagagcttccgacgcctgtacgtcccatagtccggttgagt
ggcatggctacagtaaacacactgaaaagatatctagctcaaagcatgtggtcgaatatg
tcgcgatatagtgaattggatttattctgtaacgatgaacttatgggtcgtgacttctcg
atgcgctttatccatctcacgcgatgccgtaacaagctcaaagatgaacccttgaagctt
gtatatcgatatcatattgatttttga

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