Necator americanus (New World hookworm): NECAME_09723 Help Entry NECAME_09723      CDS       T04867                                  Name (RefSeq) 50S ribosomal protein L3   KO K03010   DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Organism nai  Necator americanus (New World hookworm) Pathway nai03020   RNA polymerase nai03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:nai00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     NECAME_09723   09124 Replication and repair    03420 Nucleotide excision repair     NECAME_09723  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:nai03021]     NECAME_09723    03400 DNA repair and recombination proteins [BR:nai03400]     NECAME_09723 Enzymes [BR:nai01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      NECAME_09723 Transcription machinery [BR:nai03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      NECAME_09723 DNA repair and recombination proteins [BR:nai03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       NECAME_09723 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 Ribosomal_L3 SPRY F-box-like F-box DUF5817 DUF5816 Motif Other DBs NCBI-GeneID:  25349752 NCBI-ProteinID:  XP_013301833 UniProt:  W2TEH8 LinkDB All DBs Position Unknown AA seq 1918 aa AA seqDB search MLLRVAVSHVLCSTAETSSSLLLAHKPSINFFQFRGRRRTLTPAPWNLFFILVGYRKAFQ LPPVIESSHEDFLDDRNRALLREVVAAEKNFAINSTAASSLQCEAKITEIEPPIRRVGLL ARKIGMLPQWTTDGDRILCTLLEVCENHVVSTVSPADWYRRSIVGKRKSFNREGPLWKVT VGAVNADSNSFTRAYRGQFSRACVPVKKHLGSFLVSEEVLPTVGTSLDVRHFTVGQYVTA SGKSIDWGFQGGMHRWGMRGQPALNTTKSHRRIGSIGSTGDARVWPGKRMPGHMGYEWVT VVRMNIDRQVIYVKGSVPGDIGNILLLKDCLQPEKKLKMGPVPTWLPSLDAGMENCEGEG IEEKLLRDREIFSSKLFNFSSPTIMFSDDDARKTLGRDKTKAKIAKIVIIEVGFTVGTCF DGSRCSFDGKCCFASMIIIVFSVLATRLPHHVLSQIFQYLQLSDLRSCTLVCRHWCNVLN FEASFVSNVLFAKTKFYFQSFIGPRCFKDSTVWRALAQRKVSESALADPYLLGELNSYKK KLRAFYYAWNPNDVSKNNYVRANGFTVHRQPVAQSTDGVRGKIGVSQGVHAFDVTWEGPL GTVAVVGVATSSHFGHAALHCPGYLPLLGSDDQSWGWNLVDNTLIHNGDQLGVYPRMNNP PKYQVGERVRLILDCDRHIVYFERGGSEFLGLAFTDLPPVKLFPAICAVYGNTEFCFVKR ITMYEDDDDDMPYGEEAGDHEVEEEDDEEISSEQWQEACWVVISAYFDEKGLVRQQLDSF DEFIQMNVQRIVEDSPPVELQAEVQHFSGDIENPTKFSLKFDQIYLSKPTHWEKDGAPTP MMPNEARLRNLTYSSPLYVDITKQIQRDDEVTERKYEKVFVGKIPIMLRSSYCMLSNMSD RDLTELNECPLDPGGYFVINGSEKANNSFYGGCVSCLKFYWESGGVLIAQEKMATNTVYV FSMKDGKYAFKTECRSCLENSSRPTSTMWVNMMARSGGGTLITRVIDFDEIPVMIVFRAL GFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEQRI KYAKEILQKELLPHVGVSDFCETKKAYFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLA GPLLAFLFRALFRNLLKEMRLTAQKYINKNGDFSLDVCVKTSTITRGLAYSLATGNWGDQ KKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPE GQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVAPSSIADATKIFVNGAWVGI HRDPEHLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEKQKLALK KRHIDKLKERESGSNYSWSDLVGGGVVELIDAMEEETVMLAMMPEDLKAGGYCDTYTHCE IHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKP LVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNQSAIDRGLFRSVFYRSYRDQ EANLDGANEELIEKPTRDKCSGMRHSLYDKLDDDGIISPGMRVSGDDVIIGKTVALPEVD DDLDASSKKYTKRDASTFLRSSETGIIDQVMVSLNTDGNKFVKIRVRSVRLPQIGDKFAS RHGQKGTMGIMYRQEDMPFTCEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIG DATPFNDTVNVQKISNLLQEYGYHLRGNEVMYNGHTGTKLTTQIFFGPTYYQRLKHMVDD KIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVY VCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVDP NT seq 5757 nt NT seq  +upstreamnt  +downstreamnt atgctattacgtgtagcagtcagccatgttctatgttcgacagcggaaacatcatcgagt ctgctccttgcacataaaccttcaataaacttttttcaattccgcggacgacgtcggaca ctaactcctgcaccttggaatttgtttttcatcctcgtcggttataggaaagcttttcag ctaccaccggttattgagtcaagtcatgaagactttctagatgatagaaaccgagcacta cttcgtgaagttgttgctgctgagaagaactttgctatcaattcaacagctgcaagttca ctgcaatgtgaagctaagataactgagatagaaccgcccattagaagagttgggttacta gcgcgaaagataggaatgttgccacaatggacaactgatggtgatcgaatcttatgcaca cttctggaagtttgtgagaatcacgtcgtaagtaccgtttctcctgctgattggtatcgt agaagtatcgtaggaaaacggaaatctttcaatagagaaggaccattgtggaaggttact gttggagcggttaatgctgactcaaacagcttcactcgagcttaccgtggtcaattttcg cgtgcttgcgttcctgtcaagaagcatcttggatctttcttggtttctgaagaagtgctc cctaccgtcggaacaagtttagatgtacgacacttcactgttgggcagtacgtcacagcc tcaggaaagtcaatcgactggggatttcaaggtggtatgcatcgatgggggatgagaggc caaccagctctgaacacaactaaatcacatcgtcgcattggatctataggatcaactggt gatgcccgagtatggccgggtaaacgaatgcccgggcatatgggctatgaatgggtaact gttgttcgtatgaacatcgacaggcaggttatttacgttaagggaagtgttcctggagat attggaaatatattgctgttgaaagattgtttacaaccagagaaaaagcttaagatgggt cctgtcccaacatggctgccttctttagacgcgggtatggaaaattgcgagggtgaaggt attgaagagaaattgttacgagatagagaaatattttcttcgaagctgttcaatttttca tccccaacgataatgttttccgacgatgatgctaggaaaactcttggaagagacaagact aaggctaagattgcaaagattgttataatagaagtcggtttcactgtaggcacttgtttc gatggtagtagatgttcgtttgacggtaaatgttgctttgcttccatgataataattgtt ttttcagtacttgcgacacgtttgccacatcacgtactttcgcagatatttcagtatctt cagctatctgatctgcgtagttgtaccctggtgtgtcgccactggtgcaatgtgcttaat tttgaggcaagttttgtgtcgaatgtgttgtttgcgaaaaccaaattttactttcaatct tttattggtccgaggtgttttaaggacagtactgtttggcgggctcttgctcaaaggaag gtgtctgagtctgcgttagctgatccctatctgcttggcgagctcaattcgtataaaaag aaattaagggcattctattatgcatggaatcccaacgatgtgtcgaaaaacaactatgtc cgggcaaatggtttcactgttcatcgtcaaccggtggctcagagtactgatggagtacgt gggaagattggtgtatcacaaggagtccacgctttcgatgttacttgggaaggtccacta ggaacagtggcagtggttggagttgccacgagttctcactttgggcatgccgctcttcat tgccctggctatttacctctgctcggaagtgatgatcaaagttggggatggaaccttgtt gataatactctcattcacaatggagatcaactaggagtttatccgcgaatgaacaatcca ccgaaatatcaggtcggagagagagtgcggttgatactggattgtgaccgacacatagtc tactttgaacgtgggggctctgaatttctcggacttgcattcaccgatttaccacctgtt aaactttttcctgctatatgtgctgtatatggaaatacagagttttgttttgtaaagcgg atcaccatgtacgaagacgatgacgatgatatgccttatggggaagaagcaggtgaccac gaagtagaagaggaggatgatgaggaaatttcaagtgaacagtggcaggaagcgtgttgg gtggtaattagtgcctacttcgacgaaaaaggtcttgtgcgtcaacagcttgattcgttt gacgagttcattcagatgaatgtgcaaagaatcgtcgaggactctccaccagtcgaactg caggcggaagtgcagcatttttctggtgatattgagaatccgacaaaattttcgctcaaa ttcgatcagatttatctatccaaaccaactcactgggagaaggatggagcaccaacgcca atgatgccgaatgaggcacgacttcggaatcttacctattcttcgcctctttatgttgat atcaccaagcaaattcaacgagatgacgaggtgacagaaagaaaatacgagaaagttttc gttggtaaaatcccaatcatgctcaggtcaagttactgcatgctctctaatatgtcggat cgcgatcttaccgagctaaatgaatgtccacttgatccgggtggttatttcgtcataaac ggctcagaaaaggcaaataactctttctacggtggatgcgtttcttgtttgaaattttat tgggagagtggaggtgtactgatcgcgcaagaaaagatggccacgaacacggtatatgtg ttttccatgaaggatgggaaatacgccttcaagacggaatgtagatcctgtcttgagaac tcaagccgtccaacttcaactatgtgggttaacatgatggcacgtagcggaggaggcacg ttaataacaagagtaattgatttcgacgaaattcctgtgatgattgtgtttcgtgctctt ggcttcgtctctgaccgtgatatcctggagcatataatctatgattttgaagatcctgaa atgatggaaatggtaaaaccatcacttgatgaggcttttgtgatacaggagcaaaatgtt gctttgaattttattggtgcacgtggcgcaaaacccggagtgacaaaagaacagcgtatt aagtatgcaaaagaaattttacaaaaggagttactgcctcatgtaggagtatcagacttc tgcgaaaccaaaaaagcgtattttatcggttatatggtgcatcgtcttctgttggccgca ttagggcgacgtgaattagacgaccgagatcacatcgggaacaaacgattggacttagct ggtcccctacttgcttttcttttccgcgcacttttcagaaatttgttgaaagagatgaga cttacggcacaaaagtacataaacaagaatggagatttttctttggatgtgtgtgtgaaa acctctacaataactcgtggtcttgcttactcactggccactgggaattggggagatcaa aaaaaggcacatcaatccagagctggtgtttcacaggttctgaatcgcctgacttacact gccacattatcgcatctacgccgagcaaattcaccgataggaagagaagggaagctcgcc aagcctcgacaattgcacaacactcagtggggaatggtgtgccctgctgaaactcccgag ggtcaagctgtcggcttggtgaaaaatctggcattaatggcttatatttctgtcggatcg cttcctgaacccattcttgagtttttggaagaatggtcaatggagaatcttgaagaggta gcgccatcatctatagcggatgcaacgaagatcttcgttaatggagcgtgggttggaatt catagagaccccgaacatctcatgacaacactcaagaagcttcgcagacaaatggatata atcgtgtctgaggtatccatggtgcgggacattcgcgacagagaaatccgaatctatacc gatgctggtcgagtatgtcgacccctcttaatagttgaaaagcagaagttggctttgaaa aaacgtcatattgataagctgaaggaacgagaatccggcagtaattatagctggtcagat cttgtaggaggtggagttgtggaattgattgatgcgatggaagaggaaactgtgatgtta gctatgatgcctgaagatctgaaagcgggagggtattgcgacacgtatacccactgcgaa atccatccagcaatgattcttggagtgtgtgcttccataatcccatttccagatcacaat cagagtccaagaaacacataccagagtgctatgggtaagcaagctatgggtgtctacacc acgaatttccacgtacgtatggatactttggcacacgtgttgtattatccccagaagccc ctggttactacgagatccatggaatacctcaggttcaatgaactccctgctggaatcaat gctattgttgctattttgtcgtattcgggttacaatcaagaagattctgtaattatgaac caatcagcaattgacaggggactttttagatcggtgttctatcggtcttatcgtgaccag gaagcaaacttggacggtgcaaatgaggagctcattgagaaacctacaagggacaaatgt tctggaatgagacattctctctacgataagttggatgatgacggaattatttcccctggt atgcgtgtttccggtgatgatgttattattggcaaaactgttgcgctccctgaagttgat gacgatttggatgctagcagcaaaaagtatacgaagagagatgcgtcaacgttccttcgc agctcagaaactggtattattgaccaggtcatggtctcgctaaacactgatggcaacaaa ttcgttaagatccgtgtacgatcagtaagactaccgcagattggtgacaaattcgcgtca cgacacgggcaaaaaggtaccatgggtatcatgtatagacaggaagatatgccattcact tgtgaaggtttaaccccggacatcattatcaatccacatgcagtcccttcgcgtatgacc attggtcacttgatcgaatgtttacaaggaaagctttccgctaacaaaggtgaaatcggg gatgctacaccatttaacgatactgttaatgtacagaaaatcagcaatttgctacaagaa tacggttatcatttaagaggaaacgaagttatgtacaacggccatacaggaacaaaattg actactcagatattcttcggacctacgtattaccaacgtttaaaacatatggtggatgac aagattcattcacgcgcaagaggacctatccaaatgatgaataggcagcctatggagggt cgagcaagggacggaggtctacgctttggagaaatggagcgagattgtcagatttcccat ggagcagcacaattccttcgtgaacgccttttcgaagtgtcggatccctatcacgtttac gtgtgcaacaattgcgggctgattgttgtcgctaatttaagaacaaatagtttcgagtgc aaggcatgtcgaaacaaaacacaagtgtctgcagttcgaataccgtatgcgtgtaagcta ctatttcaagagttgatgtcaatgtctatcgctcctcggctcatggtagatccatag

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