Nakamurella antarctica: EH165_03215
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Entry
EH165_03215 CDS
T05729
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nak
Nakamurella antarctica
Brite
KEGG Orthology (KO) [BR:
nak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nak03016
]
EH165_03215
Enzymes [BR:
nak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EH165_03215
Transfer RNA biogenesis [BR:
nak03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EH165_03215
Prokaryotic type
tRNA splicing ligases
EH165_03215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
AZI57316
UniProt:
A0A3G8ZTE5
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All DBs
Position
complement(735099..736310)
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AA seq
403 aa
AA seq
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MPEHLSKKLINWASIIGDNTRDQAITSATMPFIYPHVALMPDAHLGKGATVGSVIPTLGA
IIPAAVGVDIGCGMIAVRTQWTETEFRGLFPGPSTGPGTGPSMTQLRESIESAIPLSAGQ
YNSEIIAESTAARILALEEAAVAARFSPETYAANWRLQLGTLGSGNHFIEVTVDEASRVW
LFLHSGSRGIGNKIAQHHIKVAQQQMTKWWISVPDPDLAYLVEGTDEFWKYIRELRWAQE
FARENREEMMDRVCAQIEHLTGVAVCRKETINCHHNFTEQEQHFGKKVWVSRKGAIKAAK
GDRGLIPGSMGTASYVVVGKGNPLSLNSSPHGAGRSRSRNETKKMFTAADLEVAMAGIEY
RHTDAFIDEIPQAYKDIDVVMADAADLVTIEHTLHQILNVKGD
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacacctcagcaagaagctcatcaactgggccagcatcatcggcgacaacact
cgcgaccaagcgatcacgtcggcaaccatgcctttcatctacccgcacgtcgcgttaatg
cccgacgcgcacctggggaagggggccacggtgggaagcgtcatccccacgctcggcgct
atcatccctgccgcggtcggtgtcgacatcgggtgcgggatgatcgccgtccgcacccaa
tggaccgaaaccgagtttcggggcctgtttcccggaccttccaccgggccaggaaccggg
ccatctatgacccagctccgcgaaagcatcgagtcggcgatcccactttcggctggccag
tacaacagcgagatcatcgccgaatccaccgcggcccggatcctggccctggaagaagcg
gccgtggcagccagattcagccctgaaacatatgccgcgaattggagactgcaactcgga
acactcggcagcggcaatcacttcatcgaagttacagtcgacgaagcgagcagggtgtgg
ctgttcctacattccggcagccgcggaatcggcaacaagatcgcccagcatcacatcaaa
gttgcgcaacaacagatgacgaaatggtggatcagcgtgccggaccccgaccttgcctac
ttggtagaggggaccgacgagttctggaaatacatccgggaacttcggtgggcccaggag
ttcgcccgtgaaaaccgggaggagatgatggaccgcgtttgcgcccagatcgaacatctg
accggggtggccgtgtgcagaaaggaaaccatcaattgccaccacaacttcaccgaacag
gaacaacatttcgggaagaaggtgtgggtgtcgcgcaaaggcgccatcaaagcggcaaag
ggcgataggggtctgattccaggcagcatgggcaccgccagttacgttgtcgtcggtaag
ggtaatccgttgtccttgaactcctcaccccacggcgcaggccgttcacggagccgcaac
gaaacaaaaaagatgttcaccgccgccgacctcgaagtggccatggctggaatcgagtac
cgccacaccgatgcatttatcgacgagatcccgcaggcgtacaaggatatcgacgtcgtg
atggcagatgcggccgacctcgtgacaattgagcacacactccaccagattctcaacgtc
aaaggcgactga
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