KEGG   Nakamurella antarctica: EH165_07905
Entry
EH165_07905       CDS       T05729                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
nak  Nakamurella antarctica
Pathway
nak03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nak00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EH165_07905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nak03019]
    EH165_07905
Messenger RNA biogenesis [BR:nak03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EH165_07905
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: AZI59491
UniProt: A0A3G9A138
LinkDB
Position
complement(1813112..1814746)
AA seq 544 aa
MRIVALGGIGEIGRNMTVYEYRGKLLIVDCGVLFPEATEPGVDLILPDFSYIEDRVQDIE
AVVITHGHEDHIGALPFLLRLRRDLPVLGATFSNALIAAKCKEHRINPKLQTVREGDLLS
VGAFDLEFFAVNHSIPDALAVGIRTPAGTVLHTGDIKLDQLPLDGRLTDLGGFSRFGEEG
VDLFMVDSTNAEVPGFVAPEREIGPVLDRFIASAKQRVIVASFASHVHRIQQVVDAAQRH
GRKIAFVGRSMVRNMQIAQELGFLTVPDGLIRSMDKILDLAPDKVVLISTGSQGEPLSAL
SRMARGDHRQVNLVAGDTVILASSMIPGNETSVFTVVNELARIGVQVVHQGMAKVHVSGH
ASAGELLYLYNAVKPKNVIPVHGEWRHLRANAALAALTGVPKDRILMAPDGVVVDLIKGK
ASVVGMIEVGHVYVDGNSVGDVGDATLSDRLVLGEGGFISVTVAIDATTGRAVSPPTVSG
RGFSDDPNALDAVVPLVEMELARSENDGIVDPHRIAQAVRRIVGRWVGDTYRRRPMIIPT
IITV
NT seq 1635 nt   +upstreamnt  +downstreamnt
ctgcggatcgtggcgctgggtgggattggcgagatcggccgcaacatgacggtctacgaa
taccggggcaagctcctgatcgtggactgtggcgtgctgtttccggaggcgaccgaaccc
ggcgtcgacctgatcctgccggacttcagctacatcgaagaccgggttcaggatattgaa
gcggtcgttattacgcacggccacgaggaccacatcggggcgctgccgtttttgctgcgc
ctacgccgtgacctccccgtgctcggcgcgacgttctccaatgcgttaatcgccgcgaag
tgcaaggaacaccggatcaacccgaagctacagacggtccgcgaaggcgatttgctgtcc
gttggagccttcgacctggagttcttcgcggtcaatcactccatcccggatgcgctggct
gtgggaatccgcaccccagctggcactgtgctgcataccggcgacatcaaactcgaccag
ttgccactcgacggccggctgactgacctgggcggtttctcccgtttcggcgaagaaggt
gtcgacctcttcatggtcgactccaccaacgctgaggtcccaggtttcgttgcgcccgag
cgcgaaatcggccccgtcttggaccgcttcatcgcctcggcaaagcagcgtgtcattgtc
gcatccttcgcctcccacgttcaccggatccagcaggtggtggacgcggcgcagcggcac
ggtcgcaagatcgcgttcgtgggccggtcgatggtccgcaacatgcaaatcgcccaggaa
ctcggctttctgacggtgcctgatggcctgatccggtcgatggacaagattttggacctc
gcaccggacaaggtggtgttgatctccacaggttcgcagggggagccgctgtcggcgctg
tcccggatggctcgcggcgatcaccgccaggtcaacctggtggcaggcgacaccgtcatt
ctcgcctcgtcgatgatccccggcaacgagacctcggtcttcaccgtcgtcaacgaattg
gcgcgcatcggcgtacaggtagttcatcagggcatggcgaaggtccacgtctccggacac
gcgtcggccggcgaactgctgtacctgtacaacgctgtgaagcccaagaacgtgattccg
gtacacggcgaatggcggcacctgcgcgccaacgccgcgctcgccgcgctgacgggtgtt
ccgaaggaccggatcctgatggcgcccgacggggttgtcgtcgacctgataaagggcaag
gcgtcggtggtcggaatgatcgaggtcggccacgtctacgttgatggaaactcggtcggc
gatgtcggagacgccacactttcggatcgactcgtgcttggcgagggcggctttatctcc
gtcaccgtagcgatcgatgctacgaccggccgggcagtatctccgcccaccgtttccggg
cgcggattctcagacgaccccaacgcgctcgacgccgtggtgccgctagtcgagatggaa
ctcgcgcggagcgaaaacgacggaatcgttgacccgcatcgcatcgctcaggcggtgcgc
cgcatagtgggccgctgggtgggcgacacctatcgtcgtcgcccgatgatcatcccgacc
atcatcaccgtctga

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