Nakamurella antarctica: EH165_08440
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Entry
EH165_08440 CDS
T05729
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nak
Nakamurella antarctica
Pathway
nak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EH165_08440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nak03021
]
EH165_08440
03019 Messenger RNA biogenesis [BR:
nak03019
]
EH165_08440
Transcription machinery [BR:
nak03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EH165_08440
Messenger RNA biogenesis [BR:
nak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EH165_08440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
AZI58166
UniProt:
A0A3G8ZVX6
LinkDB
All DBs
Position
complement(1928138..1930465)
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AA seq
775 aa
AA seq
DB search
MATHIPAGEKSGRTGRIFVSETTEQLESPNAKRGSGLSSMVLPELKSLAGQLGLKGTSGM
KKADLVAAISARQSAGSSSASRQGASDTAPAARGRLSATSAADLRQPETNQTPSTRQQAA
HDEAPRSEAPRSEAPRSEAPRSEAPRSEAPRSETRRGSATRAAGPAAQPEQPILFPSAAA
ASAPDAGSTARVDTGSSSSAPADDRATSGMSEEVPSSRDRTNRRNRRNRRDRTDSYGDSP
EGTNASSSHPAGAHSETPHGAGSHSGVGGGASEVADNLGALETVLDNAVGTISGTSNQNT
RTNRENQSRDGQGGQSRDGQNRNNPRNNQNRDNQSRDNQSRSTANRDSQNSSSQGDDDDL
DENGRRRGRRFRDRDRNRRGRERFTEGPTDVEIREDDVLLPVSGILDVSDSYAFVRTSGY
LTGSNDVYVSLSQVRKGGLRRGDHVTGAVRAPRDGEAARQKFNALVRLDTVNGLDPELAK
DRPEFTKLTPLYPNERLRLETESNILTTRVIDLVMPVGKGQRALIVSPPKAGKTSVLQAI
ANAIATNNPECHLMVVLVDERPEEVTDMQRSVRGEVIASTFDRPPSDHTQLAELAIERAK
RLVEMGRDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALFPPKRFLGAARNIENGG
SLTIFASALVETGSAGDTVIFEEFKGTGNAELKLDRRLADKRMFPAIDIDQSSTRKEDLL
LAPEELVIVHKLRRVLAALDAQQSLDLVLGQLRKTRSNIEFLMQVAQTTPGSNTD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcacatacccgccggagaaaagtccgggcggacaggaaggatcttcgtgagc
gagaccacggagcagctcgaatccccgaacgccaagcgcggatccggtttgtcgagcatg
gttctacccgaactcaagtccctcgccggacaattggggctcaagggcacctcagggatg
aagaaggccgatctggtggccgctatctcggcacgtcaaagtgccggcagcagctcggcc
tcgcgtcagggtgcaagcgataccgcgcccgcagcacgaggtcggctctcggcaacttcc
gctgcagatttgcggcaacctgaaacgaaccagacgccgtccacgcgtcaacaggcggct
catgacgaagccccgcgcagtgaagccccgcgcagtgaagccccgcgcagtgaagccccg
cgcagtgaagccccgcgcagtgaagccccgcgcagtgaaacgcggcgcggctccgcaaca
cgcgctgccggacctgccgcgcaaccagaacaaccgattcttttccccagcgcggcggct
gcatccgcccccgatgccggttctacggcacgggtggacaccggcagttcgtcgtcggca
cctgctgacgacagagcaaccagcggcatgtccgaagaggtgccatccagccgcgaccgg
accaaccggcggaacaggcgtaaccggcgcgatcgcaccgatagctatggcgattcgccc
gaaggcactaacgcctcaagctcccaccccgcaggcgctcactccgagacgcctcatggc
gcaggcagccatagcggggtcggtggcggcgccagcgaagtagctgacaatctcggcgcg
ttggaaactgttctcgataacgccgtgggaaccatcagcggcacttcgaatcaaaacacc
cggaccaaccgggaaaaccaaagccgggatggccagggcggccaaagccgggatggccag
aaccgcaataatccgcgcaacaaccagaaccgggacaaccagagccgggacaaccagtcc
cgcagcacggcaaaccgggacagtcaaaattcgtccagccagggcgatgacgacgacttg
gatgaaaatggtcgacgtcgtggccgccgtttccgcgaccgggatcgcaaccggcggggg
cgcgagcgcttcaccgaaggccccaccgatgtcgaaattcgcgaagatgacgtcttgctt
cccgtctccggaattttggatgtttccgattcgtacgcgttcgtccgcacttccgggtac
ctgaccggatccaacgacgtttacgtatcgctgtcacaggtgcgaaagggcggactccgc
cgcggcgatcacgtcaccggcgccgtccgtgcgccgcgggatggagaagccgcccggcag
aagttcaacgcgctggtccgccttgacaccgtgaatgggctggatccggagcttgcgaag
gatcgccccgagttcaccaagctgacgccgctgtatccgaacgagcgcctgcgacttgaa
actgagtcgaatatcctcacgacccgcgtcatcgatttggtgatgccggtgggtaaggga
cagcgcgcactgatcgtgtcgccgcccaaggccggaaaaacgtcggtgcttcaggcgatc
gccaatgccatcgccaccaacaatccggaatgccacctcatggtggtcctcgttgatgag
cgacccgaggaagtaacggatatgcagcgcagcgtcaggggggaggtcattgcctccacc
ttcgaccggccgccgtcagatcacacccagctggctgaattggccatcgagcgggccaag
cggctcgtcgaaatgggtcgagatgtggtggtgttgctcgactccatcacccgcctcggc
cgcgcatacaacttggccgcgcccgcttcgggacgtattttgtccggtggcgtcgattcg
acggcgctgttcccgccgaaacgcttcctcggcgccgcacgcaacatcgaaaacggcggt
tcgctgaccatcttcgcctccgcgctcgtagaaactggctctgctggcgacaccgtgatc
ttcgaagagttcaagggcactggaaacgcggagctgaagctggaccggcggttggcagat
aagcgaatgttcccagctatcgatatcgaccagtcgtcgacgcgtaaggaagatttgctg
ctggcacctgaggaattggtgatcgtccataagttgcgccgcgtgctggcagcgttggat
gctcagcagtcgctcgacttagtactcggtcagcttcgcaagacgcggagcaacatcgag
ttcttgatgcaagtcgctcaaaccacgccggggtcgaacactgactga
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