Nakamurella antarctica: EH165_11695
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Entry
EH165_11695 CDS
T05729
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nak
Nakamurella antarctica
Pathway
nak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EH165_11695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nak03021
]
EH165_11695
03400 DNA repair and recombination proteins [BR:
nak03400
]
EH165_11695
Enzymes [BR:
nak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EH165_11695
Transcription machinery [BR:
nak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EH165_11695
DNA repair and recombination proteins [BR:
nak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EH165_11695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
V-SNARE_C
Motif
Other DBs
NCBI-ProteinID:
AZI58703
UniProt:
A0A3G8ZN70
LinkDB
All DBs
Position
complement(2613403..2617362)
Genome browser
AA seq
1319 aa
AA seq
DB search
MLDVNFFDELRIGLAAAEDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYLITSVNTELRHTDLPTIEAEMGVERKRMEDDRDADIDARAKKLETD
LAELEAEGAKSDVRRKVREGGEREQRHIRDAAQRHIDRLDEVLTTFKKLTPRELIIDEVL
FRELHDRFGEYFEAGMGAEALQKLIADFDIDAEAESLRDTIKNGKGQRKIRAIKRLRVVA
AFQATKNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
SQVWDVLEEVISQHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQSEARVLMLSSNNILSPGSGKPLAMPSLDLVTGLYFLCGWDDNAVGNKH
IQDGSVDEAAGQLRTFSSTAEALMALDLKQISVRTPIKIRLKDVVPLPEVVMPEDWTAGD
PWIAHTTLGRVLFNELLPADYPFINEEMPKKRQATIVNDLAERYPMSLVARTLDALKEAG
FHWATRSGMTIAIGDVIIPPAKAEILAKFDLQAEKVEAAYQRGNLSHPERNEDLVRIWEA
ATKEIEAAIPLAYPKDNPVYTLVAAGAAGNWIQVRSLAGMKGVVANSRGEQIPRPIRSSF
REGLSVLEYFINTHSARKGLADTALRTAESGYLTRRLVDVSQDVIVRDTDCGTERGAELA
IAHKGIGGVLNKDEFTETSVVARILSSDAVSADGTVIVTRGTDLKDSHVNDAIAAGITSI
KVRSVLTCESIIGTCAVCYGRSLATGELVDVGEAVGIVAAQSIGEPGTQLTMRTFHTGGA
SGSADITQGLPRVQELFEARIPKGRAPIADAAGRIRIDDTEKFLKITIVPDDGSEEVEYD
KLPKTQRLATTVVDGSERLLQDGDTVVVGQQLMEGNVDPHEVLRVMGPRAVQLHLVREVQ
QVYRSQGVSIHDKHIEVIIRQMLRRVTIIDSGSTEFLPGAVIERREFETQNRRMLAEGLE
AAAGRPALMGITKASLATDSWLSAASFQETTKVLTDAAINAKSDKLVGLKENVIIGKLIP
AGTGINRYRNLTVQPTEEARAAAYALPSFDDNYYSSDGFGQSAGAAVPLDDYDLGRDYR
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttctttgatgagttgcgtattggcctcgctgctgccgaggacatc
cgcgcgtggtcgcacggcgaggttaagaagccggaaacgatcaactaccgcaccctgaag
ccggaaaaggacggactcttctgcgagaagatcttcggtccgacccgcgactgggaatgc
gcctgtggcaagtacaagcgtgtccgcttcaagggcatcgtgtgcgagcggtgtggcgtc
gaggtcacccgcgctaaggtgcgccgtgagcggatgggccacattgagctcgccgctccc
gtcacccacatctggtacttcaagggtgtcccgagccggttgggctacttgctcgacctg
gctccgaaagacctcgagaagatcatctacttcgcggcttacttgatcacctcggtgaac
acggagctgcggcacaccgatctgccgaccatcgaagctgagatgggcgtcgagcgtaag
cggatggaagacgatcgcgacgccgacatcgacgcgcgcgccaagaagctcgaaactgat
ctggccgaactcgaagctgagggcgccaagtccgacgtacgccgcaaggtgcgcgagggt
ggagagcgcgaacagcgtcatattcgcgacgccgcgcagcgtcacatcgaccgtcttgac
gaggtcttgaccacgttcaagaagctgaccccgcgtgaactgatcatcgacgaggtgctc
ttccgcgaactccacgaccgtttcggcgagtacttcgaagctggcatgggcgccgaggca
ctgcagaagctgatcgccgatttcgatatcgacgcagaggccgagagccttcgtgacacc
atcaagaacggtaagggccagcgcaagatccgcgccatcaagcggctccgcgtcgtcgca
gcgttccaggcgacgaagaattcaccgctcggcatggttctcgactgcgtcccggtcatc
cccccggatctgcgccccatggtgcagctcgacggaggtcgtttcgctacctccgacctc
aacgacctgtaccgccgtgtcatcaaccgcaacaaccggttgaagcgactgctggacctc
ggcgcaccggaaattatcgtcaacaacgaaaagcggatgctgcaggaggccgtcgacgca
ctgttcgacaacggtcgccgtggccggccagtgaccggaccgggtaaccgtccactgaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgtcagaaccttctcggcaag
cgcgtggactactccggtcgttccgtcatcgtcgtcgggccgcagctcaagctgcaccaa
tgtggtctgcccaagctgatggccctcgagctgttcaagccgttcgtgatgaagcgcttg
gttgacctcaaccacgcacagaacatcaagagcgccaagcgcatggtcgagcgtcagcgc
agccaggtgtgggacgtcctcgaagaggtcatctcccagcacccggtgctgctcaaccgt
gcacccaccctgcaccgcttgggtatccaggccttcgagccgatgctcgtcgaaggtaag
gcgatccagctgcacccgctggtctgcgccgcgttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggcccagtccgaggctcgcgtgttgatgctc
tcgagcaacaacattttgtcccccggatccggcaagccgctcgcaatgccatccctcgac
ctcgtcaccggtctgtacttcctgtgcggctgggacgacaacgcggtaggcaacaagcac
atccaagacggttcggttgacgaagccgctggccaactgcgcacattctcgtccaccgcc
gaagctttgatggccttggacttgaagcagatcagcgtccggaccccgatcaagatccgc
ctgaaagatgttgtgccgctgcctgaagtagtcatgcccgaagactggactgcgggcgat
ccctggatcgcgcacaccacactggggcgcgtgctgttcaacgagttgcttcccgcggac
tatcccttcatcaacgaagagatgccgaagaagcgtcaggcgacgatcgtcaacgacctg
gccgagcggtacccgatgtcgctggtagcccgcacccttgatgcactcaaggaggccggt
ttccactgggccacccgttcgggtatgacgatcgccatcggcgacgtcatcatccccccg
gcgaaggccgagatcctggccaagttcgatctgcaggcggaaaaggtggaagcggcttac
cagcgcggaaacctgtcccacccggagcgcaacgaggacctggttcggatttgggaagct
gccacgaaggaaattgaagctgcgatcccgctggcctacccgaaggacaacccggtgtac
accctggttgccgccggcgccgctggtaactggattcaggttcggtcgctggccgggatg
aagggcgtcgtggctaactcccgcggcgagcagattcctcgtccgattcggtcatctttc
cgtgaaggcctctcggtgttggaatacttcatcaacacccactccgcccgtaagggcttg
gccgacaccgcgcttcgtacggcggagtccggttacctgacccgtcgtctggtcgacgtg
tcccaggacgtcatcgttcgcgatacagactgtggcaccgagcgtggcgccgaactggcc
atcgcgcacaagggtattggtggggtgctgaacaaggacgagttcaccgaaacttcggtg
gtcgcccggatcctgtcctccgacgcggtttccgctgatggcaccgtcatcgtcacgcgc
ggcaccgacctgaaggattcgcacgtcaacgacgcgatcgccgctggcatcaccagcatc
aaggtgcgctcggtgttgacctgcgagtcgatcatcggtacctgcgcagtgtgctacggc
cgctcgttggccaccggtgaactggtcgatgtgggtgaggcagtcggtattgttgccgca
cagtccatcggcgagcccggtacccagctgaccatgcgcaccttccataccggtggtgcg
tccggttccgcagacatcacccagggtctgccccgagtgcaggagttgttcgaagcccgt
atcccgaagggacgtgcgcccatcgcggacgccgccggtcggatccggatcgacgacacc
gagaagttcctgaagatcaccatcgttccggatgacggaagcgaagaagtcgaatacgac
aagctgcccaagactcagcgtctggcaactaccgtcgtggacggctccgagcgattgctg
caggatggcgacaccgtcgttgtcgggcagcagttgatggagggcaacgtcgacccgcac
gaggttttgcgtgtgatgggtccccgcgccgtccagctgcacttggtccgcgaggtccag
caggtgtaccgctcgcagggtgtgtccattcacgataagcacatcgaagtcatcattcgg
cagatgctgcgccgcgtcacgatcatcgattccggttcgaccgagttcttgcccggcgcc
gtcatcgagcgtcgcgaattcgaaacgcagaaccgtcggatgctcgccgaaggtctggag
gccgcagctggccgcccggctttgatgggtatcaccaaggcctccttggccaccgactcg
tggctctcggccgcctccttccaggagacgaccaaggtcctcaccgacgcggctatcaac
gccaagagcgataagctcgtcggcctcaaggagaacgtcatcattggtaagctcatcccg
gccggaaccggtatcaatcggtaccgcaacctcacggtgcagccgaccgaagaggcccgc
gcagctgcctacgcactgccgagtttcgacgacaactattactcctcggacggtttcggt
cagtctgccggcgctgcggtgccgttggacgactacgacctgggacgcgattaccgctag
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