Nakamurella sp. PAMC28650: H7F38_11180
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Entry
H7F38_11180 CDS
T08954
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
Organism
naka
Nakamurella sp. PAMC28650
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
zf-HC2
Sigma70_r4_2
NPCBM_assoc
CARDB
CLIPPER
Sigma70_ECF
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
QNK83154
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Position
complement(2451364..2455494)
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AA seq
1376 aa
AA seq
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MPPVEDHAQLASDAELITRVRAGDRSAFGDLYARHAGAALALARQFSRSPTEADDLVSEA
FARVLDGMLESKGPDTAFRAYLFTTLRNTAYDRTRKDKRLQFSDDMERHDVAVEGDDPII
ADLEKGLIGKAFAGLPERWQTVLWHMQVEGQSAAEVGVLLGMAPNAVSSLAFRAREGLRE
AYLQAHLAETAAERCRTTVDRLGAWTRGGLSKREKAQVDAHLEECRRCPALAAELSEINT
GLRGLLAPLLLGGAAAGYLSTLGPVAPLAQLGVLTGGKVAAVGGKAAVAGGKGIAGHAAA
GLAKIGSLGPGAVAAGVAAAAAVAVAAITIALTSGHSAPSTAAAGTSGVSALTSGPVAGP
GGTGGGASGGGGTANGGNGGAAVGGTATGGTRTGGTTTGPGATAGSTGPAGAGSGGAGGA
GGTGGSGGVGGTGGLPIIVIPATTPTIAITPTVPNTEGNAGATALTGPSGTSPANGSGAT
PTDSGVTGTSQTSGPSSTPGTSTSTSTSTNTSGTTTPGTTTPSTTGPTTTGPTTTGATTG
TTTTSPTTSPTTTSPTTTPPPPPVAIIGVDTRSVSVGVAGGLGVLKLQIANSGDGPSAAG
LTMQVNVPPGVTLGQPTLSQALRSSAGAFASRVASDTCAAAGASTMTCTLPPVAAGKSLT
LTFIVAADPTAVAKSDIAVSFDGGAATKVPLTVASGYRTVSFSSSNPLGRAATATARLTA
VTVDQVTDAGTLSVPLAIAPGMTITGLAPGTPAAKAGTGCSIGTVALICPSGAAIAGVDL
VVAVDTTPTPGPDTTAPATDQGGRSLITGSLDVSDSPNGGYTADNPVELDPAGVLAQGTT
TSITLLGHPLPGVIDSGPIVVPVDLTQGTGVTIDVTNLPTGCVLTPNASPAGSLVTCTPA
DNNGSATFPLTVVVAPDATGGTLWPVTLPVGSSPTPGVAGAHTLDIDPMLTGYQGVTARI
QGLNAGTDGSLTLVGTVKPGITNPGKVTVPVALGPGVSITASASDNCTVNLVGAVCTPGI
GGTTTWKLVVHTASDAKQGTLAFPSLRLAGSAGLIPVTTGSDLTVRALATSCGPAATLLQ
GDFETPQVSPGAGKFQNSSTTAWNTTEPDQMIEFWRTGAGIARNNGGVDMAAHSGSQWVE
LNARQASALYQDVRTVPGQQMRWTIWHRARALDGLKADVTIDKMAVQIGASAPYFHPDSN
TAVADNAVDWVQHSGVYIVPAGQRSTRFQFVAISTASGDPSVGNFLDDISFSTVPCLTAA
TSVTNSNPSHATARPGDTLTISTTVTNNGGDAAANVVVTNPAPANTTEVAGSQLPIAASI
DPGRSATTSFKVTVDADVPDGTVISDNAALTYVWPPSTDPLGSLSNTVTTTVSATG
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcccgtcgaggaccacgcacagctggcgagcgacgccgagctgatcacgcgtgtg
cgtgcgggtgaccgttccgccttcggcgatctgtacgcacggcatgccggtgcggcgctc
gcgctcgcccggcagttctcccggtcgccgaccgaggccgacgacctggtgtccgaagcg
ttcgcccgcgtgctggacggaatgctggagagcaaaggccccgacaccgcgttccgcgcc
tacctgttcaccacacttcgcaacaccgcctacgaccgcacccgcaaggacaagcggctg
cagttcagcgatgacatggaacggcacgacgtcgcggtcgagggtgacgacccgatcatc
gccgatctggagaaggggctgatcgggaaagccttcgccgggctgcccgaacgttggcag
acagtgctgtggcacatgcaggtcgaaggacagtcggccgccgaggtcggagtgctgctg
gggatggctcccaatgccgtctcgtccctcgccttccgggccagggagggtctgcgcgag
gcctacctgcaggcccatctcgcggagacggccgccgaacgctgtcgtaccacggtcgac
cgcctcggggcctggacccgcggagggttgtccaaacgtgagaaggcccaggtcgatgcc
catctcgaggagtgccgccgttgcccggcgctggctgccgagctctccgagatcaacacc
ggcctccgcggcctgctggcgccgctgctgctcggcggggccgccgctggatatctgtcc
accctgggaccggtcgcaccccttgcccagttgggggtgctgaccggcgggaaggtcgcc
gccgtcggaggcaaggccgctgtcgccggcgggaagggcatcgccggacacgccgctgcg
ggtctggccaagatcgggagcctcgggcccggagccgtcgccgccggggtggccgcggcg
gccgcggtcgccgtggccgccatcaccatcgcgttgaccagcggccattccgcgccgtcg
acggccgcggccgggaccagcggggtcagtgccctgaccagtggacccgtcgccggtccc
ggcgggaccggcggtggtgcgtcaggcgggggcggaacggccaacggtgggaacggcggg
gctgcggtcggcggaactgcgacgggcgggacgaggacgggtgggacgacgacgggtccc
ggcgcaaccgccgggtccacgggtccggccggagcgggctcgggcggtgcaggcggtgca
ggcgggaccggaggctcgggtggtgtcggcgggaccggcggcctccccatcatcgtgatc
ccggcgacgacgcccaccatcgccatcacgccgaccgtcccgaacaccgagggcaacgcc
ggcgcgacggccctgaccggaccgtcgggaacctcgccggcgaacggctccggcgccacg
ccgaccgactccggtgtgaccggaacttcccagacctccggtccgagctcgacgcccggc
accagcacaagcaccagcacgagcaccaacacatctggcaccaccacgcccggaaccacg
acccccagcaccaccggcccgaccacgaccggccccaccacgaccggcgcgaccaccggc
accaccaccaccagcccgacgaccagccccaccacgaccagccccaccaccacaccgccg
cccccgcccgtggcgatcatcggggtcgacacccgcagcgtgagtgtcggcgtcgccggc
ggcctcggcgtgctcaagctccagatcgcgaacagcggtgacggcccctccgcggccggc
ctgacgatgcaggtgaacgttccccccggagtcacgctggggcaacccacgctcagccag
gccctgcggagcagtgcgggtgcgttcgcgagccgagttgcgtccgacacctgtgccgcc
gccggtgcgtcgacgatgacctgcacgctgccacccgtcgccgccggcaaatcgctgacg
ctgaccttcatcgttgcggccgatccgaccgccgtcgccaaatccgacatcgccgtgtcc
ttcgacgggggagccgcgaccaaagtccccctcacggtggccagcggctatcggacggtt
tccttcagctcgagcaacccactgggacgcgccgccaccgccaccgcccgtctgaccgcc
gtgaccgtggaccaggtcacggacgcagggacgttgtccgttccgctggccatcgctccg
ggaatgacgatcaccgggttggccccgggaacgccggcggcgaaggccggcacaggttgc
agcatcgggactgtcgccctgatctgtccgtccggcgcagccatcgcgggggtcgacctg
gtcgtcgccgtcgacacgaccccgaccccggggcccgacaccaccgcccccgccaccgat
cagggcggacgttcgctgatcaccgggtccctcgacgtgtcggacagtcccaacggcggc
tacacggccgacaacccggtcgaactggacccggcgggcgtgctcgcccagggcaccacg
accagcatcaccctgctcggccacccgctgcccggcgtcatcgattccgggccgatcgtg
gtcccggtcgacctgacgcaagggaccggcgtgaccatcgacgtgacgaacctgccgacc
gggtgcgtgctcacgccgaatgcgtcgccggcggggtcactggtgacctgcacgccggcc
gacaacaacggctcggccaccttccccctcacggtggtcgtcgccccggatgcgaccggc
ggaaccctctggccggtcaccctgcccgtggggtcgagtcccactccaggcgtggcaggt
gcccacacgctcgacatcgacccgatgctgaccggctaccagggggtcaccgctcggatc
cagggtctcaatgcgggcaccgacgggtcgctgaccctggtcggaacggtcaaacctggc
atcacgaatccaggcaaggtcaccgttccggtggctctcgggccaggcgtgagcatcact
gcctcggcgagcgacaactgcaccgtcaacctggtcggggcggtgtgtacccccggtatc
ggaggcaccacgacctggaagctggtggtgcacacagcatccgacgcgaaacagggcacc
ctggcgtttccgtccctgcgtctggccggctccgcaggcctgatcccggtcaccaccggc
tcggatctgaccgtccgggccctcgccacctcctgcggcccggccgccacgctgctgcaa
ggggatttcgagacgccccaggtcagtcccggtgccggaaagttccagaactccagcacg
acggcctggaacaccaccgagccggaccagatgatcgagttctggcgcacgggtgcaggc
atcgcaaggaacaacggcggcgttgacatggcagcccatagcggcagccagtgggtcgag
ctcaatgccagacaggcgagcgctctctaccaggacgtcaggacggtgcccggccagcag
atgcgctggaccatctggcatcgggccagagccctcgacggcctcaaagccgacgtgacc
atcgacaagatggccgtgcagatcggcgcttcagcgccctacttccaccccgactcgaac
accgcggtcgccgacaatgcggtcgactgggtgcagcacagtggcgtctacatcgtgccg
gcgggccagagatcgacccgattccagttcgtcgcgatttcgaccgcctccggggacccc
agcgtcggcaacttcctggacgacatctccttcagcaccgtcccctgcctgaccgcggcc
acgtccgtgaccaattccaatccgtcgcacgccacggcccgcccgggtgacacgctgacg
atcagcaccaccgtgacgaacaacggtggtgacgccgccgccaacgtcgtcgtcacgaat
cccgccccggccaacaccaccgaggttgccggctcccaattgccgatcgccgcgtccatc
gatccgggccgatccgcgacgaccagcttcaaggtgacggtcgacgcggacgtcccggac
ggcacggtcatcagcgacaatgcggcgttgacctacgtctggccaccgtcgaccgatcct
ctcgggtccctctccaacaccgtgacgaccaccgtctcggcgaccgggtag
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