Nakamurella sp. PAMC28650: H7F38_15215
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Entry
H7F38_15215 CDS
T08954
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
naka
Nakamurella sp. PAMC28650
Pathway
naka03030
DNA replication
naka03430
Mismatch repair
naka03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
naka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7F38_15215
03430 Mismatch repair
H7F38_15215
03440 Homologous recombination
H7F38_15215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
naka03032
]
H7F38_15215
03400 DNA repair and recombination proteins [BR:
naka03400
]
H7F38_15215
Enzymes [BR:
naka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H7F38_15215
DNA replication proteins [BR:
naka03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H7F38_15215
DNA repair and recombination proteins [BR:
naka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H7F38_15215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
UVR
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
QNK83794
LinkDB
All DBs
Position
complement(3353627..3355333)
Genome browser
AA seq
568 aa
AA seq
DB search
MSDAAYGQHSFDELGDPLREVTFVVVDLETTGGSSVTESITEFGAVKVRGGEVLGEFATL
VDPGRAIPPQIVMLTGITDAMLVDAPKIAVVMPSFLEFIRGSVLVAHNAGFDIGFLKAAC
ARLGLPWPGNPVVDTVRLARRVLTREEAPSVRLGLLAPLLGSTVAPDHRALTDARATVDV
LHALFERLGPLGVQSLTELQQLSRDVSPARRRKRGLADHLPSTPGVYLFRGPSDEVLYVG
TSVNLRQRVRSYFGAGETRGKIKQMITLAQRVDYVECSHALEALVREQRMIAIHQPKYNR
RSRAPFKVFWVVLTSETFPRLSIVGTPPAGRAGALGPFTSRAAATTAVEALQEVVLIRRC
SQRLRKTPDGSPCALAELGRCGAPCAGREDAGSYAAHVHRIAGLIDGSSDEVLERLRTEL
DRLAVQGRFDQAAVLRDRLSVLADAVDRRQRLGSFAGIEQLVTARPSPKGGWELAVIRYG
RLAAAGRAGPGVDPMPVVDLLTASAETVIPGPGPLPGASAEETGTLLRWVEGPGTRLVHS
TGPWSSPARGAGRWRPFMAAVHLARSVP
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
ctgtcggacgccgcctacggtcagcacagcttcgacgaactgggcgaccccctgcgagag
gtgaccttcgtcgtggtcgacctggagaccaccggtgggtcgtcggtcaccgagtcgatc
accgagttcggcgcggtgaaggtgcgcggcggcgaggtgctcggcgaattcgcgaccctg
gtcgatccggggcgcgccatcccgccgcagatcgtgatgctcacggggatcaccgacgcg
atgctggtcgacgcgccgaagatcgccgtcgtcatgccgtccttcctggagttcatccgg
ggatcggtgctggtcgcgcacaacgccggtttcgacatcgggttcctcaaggcggcctgc
gcgcggctcgggctgccgtggccgggcaatccggtggtcgacaccgttcggctggcccgc
cgcgtcctgaccagggaggaggcccccagcgtccggctcgggctgctggccccgctgctc
ggttccaccgtcgcccccgatcaccgcgctctcaccgacgcgagggcgacggtggacgtg
ctgcacgcgctgttcgagcgcctcgggcccctcggcgtgcagagtctcaccgagctgcag
cagctctcccgcgacgtctcccccgcgcggcgtcgcaagcgcggcctggccgaccacctg
cccagcactcccggcgtgtatctgttccgcggcccgtccgacgaggtcctgtacgtgggg
acgtcggtcaacctccggcagcgggtcagatcgtatttcggcgccggtgagactcgcggg
aagatcaagcagatgatcaccctcgcgcagcgggtggactacgtcgagtgctcgcacgcc
ctcgaggcactcgtccgcgaacagcggatgatcgcgatccaccagccgaagtacaaccgg
cggtccagggcgcccttcaaggtgttctgggtggtgctgaccagcgagacctttccgcgg
ctcagcatcgtcggcactcccccggcgggccgggcgggagcgctgggcccgttcacctcc
cgggccgccgccacgacggccgtcgaggccctgcaggaagtggtcctgatccgtcgctgc
tcccaacggctccgcaagactccggacggaagtccctgtgccctggccgaactcggccgc
tgcggcgccccgtgcgccggtcgcgaggacgccgggagctacgccgcccacgtccaccgg
atcgccggcctgatcgacggttcctccgacgaggtgctcgaacgcctgcggaccgagctc
gaccgactcgcggtgcagggccggttcgaccaggccgcggtcctgcgggaccggctgtcg
gtgctggccgacgccgtcgaccgccgtcagcgcctcggttcgttcgccggcatcgagcag
ttggtcaccgcgaggccctcgcccaaggggggctgggagctcgccgtcatacgctacggc
cggctggcggccgccggccgggccggacccggggtcgatccgatgccggtggtcgatctg
ctcaccgcctccgccgagaccgtcatccccggtcctgggccacttcccggggccagcgca
gaggagaccggcacgctgctgcgctgggtggagggaccggggacacgactggtgcacagc
accgggccgtggtccagcccggcccgcggcgccgggcggtggcggccgttcatggcggcc
gtccatctggcacggtccgtgccctag
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