Nocardiopsis akebiae: KGD83_08175
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Entry
KGD83_08175 CDS
T08903
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nake
Nocardiopsis akebiae
Pathway
nake03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nake00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGD83_08175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nake03019
]
KGD83_08175
03009 Ribosome biogenesis [BR:
nake03009
]
KGD83_08175
Enzymes [BR:
nake01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KGD83_08175
Messenger RNA biogenesis [BR:
nake03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KGD83_08175
Ribosome biogenesis [BR:
nake03009
]
Prokaryotic type
rRNA processing factors
KGD83_08175
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QUX30482
UniProt:
A0ABX8C7X0
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All DBs
Position
1912344..1915307
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AA seq
987 aa
AA seq
DB search
MLDNEPNNGADGTAGTTETTNDTAAAPPAGGGEVRVTSPAPAKGVRRAAGPPPEPDDVFT
PPSAPVTSLAGSGEGGTVKTSVATTSRRRTVRAAGRPDEDAAPRRARASADEDKAPRRSR
ASAPASEDTAPSTARSRGRSRARSAAAAETAGPAPSEAADEPAKDEETVEAGGGNVFQAP
SMLFQPPVASAAPVPARGTAPAEADEDAHEESEEEAAQATGAEETGDGDDDRPSRRRRRR
GGRGRGRSRGDEDEAAEAPEPAEGKAEQRGDKDRGADDGAADEAAESDDRSSRRRRRRRR
RSGGGDGPEATSDDPPNTVVRVREPRQEKPIEDEVQAVRGSTRLEAKKQRRREGREQGRR
RAPIVTESEFLARRESVKRDLVVRRVEDRTQIAVLEDDILVEHYVDRATHRSYVGNVYLG
RVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDSFGLDGQPKRIESVLKSGQSVLVQVTKD
PVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDKERARLKQILKKVMPSGAGVIVR
TAAEGASEEELERDITRLAKQWDSIKRKSKSANAPSLLNSEPDLTVRVVRDVFNEDFSSL
VVSGEEAWTTVHEYVDYVAPNLSERLSHWNEDRDVFAAYRVDEQINKALERKVWLPSGGS
LVIDRTEAMTVVDVNTGKFTGQGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFID
MVLESNRDLVLRRMLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSHSCEHCNG
RGLVVASDPVESKGGGNGNGRKKKKGKGEPDQAAEKPEKAEKPSSGKPERADGPDRAEKA
GGDADGSAEADAARTEEAPEAPEPAKKTRKRASRSRKAEAAAEEQEEITATEEAPEAAEP
ERAAEAPEEAPAKKTRARRTTRRTARAAADTGEAEAAGGESVPAEADATAAETPAEAGDD
EAAERPKRRRTRRTRAAATPPTAVDAG
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagcccaacaacggtgccgacggcaccgcgggtacaactgaaacaacc
aacgacacggcggcggcgccccccgcggggggcggcgaggtgcgcgtgacctcgcccgcg
cccgccaagggcgtccgccgcgccgccggaccaccccccgaacccgacgacgtcttcacc
cccccctccgcgcccgtcacctccctcgccggttccggtgaggggggcacggtcaagacc
tcggtggccacgacctcgcgcaggcgcaccgtgcgcgccgcgggccgtcccgacgaggac
gccgccccgcgcagggcccgcgcctccgctgacgaggacaaggctccgcgccgttcgcgc
gcctccgcccccgcctcggaggacaccgccccctccacggccaggagccgcggccgttcg
cgcgcccgctccgccgcggccgcggagaccgccgggcccgcgccctccgaggcagccgac
gagcccgccaaggacgaggagaccgtggaggcgggcggcggcaacgtcttccaggccccc
tccatgctcttccagcccccggtggccagcgccgcccccgtgcccgcccgcggcaccgcc
ccggcggaggccgacgaggacgcgcacgaggagtccgaggaggaggccgcacaggccacc
ggcgcggaggagaccggcgacggggacgacgaccgccccagccgccgtcgccgccgtcgc
ggaggccggggacgcggccgctcccgcggggacgaggacgaggccgccgaggcccccgag
cccgccgagggcaaggcggagcagcgaggcgacaaggaccggggcgcggacgacggcgcg
gccgacgaggccgccgagtccgacgaccgcagcagccgccgccgtcgccgccgtcgccgc
cgctccggcgggggggacggccccgaggccacctcggacgacccccccaacaccgtggtc
cgggtgcgcgagccccgccaggagaagccgatcgaggacgaggtccaggcggtccgcggc
tccacccggctggaggccaagaagcagcgccgccgcgagggccgtgagcagggccgccgc
cgcgcccccatcgtcaccgagtccgagttcctggcccggcgcgagtcggtcaagcgggac
ctggtggtgcgccgcgtcgaggaccgcacccagatcgccgtcctcgaggacgacatcctc
gtcgagcactacgtcgaccgggccacgcaccgctcctacgtgggcaacgtgtacctgggc
cgggtgcagaacgtgctgccctcgatggaggccgcgttcgtcgacatcggcaagggccgc
aacgccgtcctgtacgcgggcgaggtcaactgggactccttcggcctggacggccagccc
aagcgcatcgagtcggtgctcaagtccggccagtcggtcctggtgcaggtcaccaaggac
cccgtcggccacaagggcgcccgcctgaccagccagatcagcctgcccggccgctacctc
gtgtacgtgcccggcggctcgatgaccggcatcagccgcaagctccccgacaaggagcgc
gcgcgcctcaagcagatcctcaagaaggtcatgccctccggcgcgggcgtcatcgtgcgc
acggccgccgagggcgccagcgaggaggagctggagcgcgacatcacccgtctcgccaag
cagtgggactccatcaagcgcaagtccaagtctgccaacgccccctcgctgctcaacagc
gagcccgacctgacggtgcgggtcgtgcgcgacgtgttcaacgaggacttctccagcctc
gtcgtctccggtgaggaggcctggaccaccgtccacgagtacgtggactacgtggccccc
aacctctccgagcgcctctcgcactggaacgaggaccgcgacgtcttcgccgcctaccgc
gtcgacgagcagatcaacaaggccctggagcgcaaggtctggctgcccagcggcggttcg
ctggtcatcgaccgcaccgaggccatgaccgtggtcgacgtcaacaccggcaagttcacc
ggccagggcggcaacctggaggagacggtcaccaagaacaacctggaggcggccgaggag
atcgtccgccagctccggttgcgcgacatcggcggcatcatcgtcatcgacttcatcgac
atggtcctggagtccaaccgcgacctggtgctgcggcgcatgctggagtgcctctcgcgc
gaccgcaccaagcaccaggtggccgaggtgacctcgctgggcctggtccagatgacccgc
aagcgggtcggccagggcctgctggaggccttctcgcacagctgcgagcactgcaacggc
cgcggcctggtggtcgccagcgacccggtcgagagcaagggcggcggcaacggcaacggc
cgcaagaagaagaagggcaagggcgagccggaccaggccgccgagaagccggagaaggcc
gagaagccgtcctccggcaagcccgagagggccgacgggccggacagggccgagaaggcg
ggcggtgacgccgacgggtccgccgaggcggacgcggcgcggaccgaggaggcccccgag
gccccggagcccgccaagaagacccgtaagcgggcctcccgctcccgcaaggccgaggcc
gcggcggaggagcaggaggagatcaccgccacggaggaggcccctgaggccgcggagccc
gagcgggccgcggaggcccccgaggaggccccggccaagaagacccgcgcccggcgcacc
acccgtcgtaccgcccgcgcggcggccgacaccggtgaggccgaggccgcgggcggtgag
agcgtccccgccgaggcggacgcgaccgccgccgagacgcccgccgaggccggtgacgac
gaggccgccgagcggcccaagcgccgccggacccggcgcaccagggcggcggccaccccg
ccgaccgccgtggacgcgggctga
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