Nocardiopsis akebiae: KGD83_08565
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Entry
KGD83_08565 CDS
T08903
Name
(GenBank) type IIA DNA topoisomerase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
nake
Nocardiopsis akebiae
Brite
KEGG Orthology (KO) [BR:
nake00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nake03032
]
KGD83_08565
03400 DNA repair and recombination proteins [BR:
nake03400
]
KGD83_08565
Enzymes [BR:
nake01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
KGD83_08565
DNA replication proteins [BR:
nake03032
]
Prokaryotic type
DNA Topoisomerases
KGD83_08565
DNA repair and recombination proteins [BR:
nake03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KGD83_08565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
HATPase_c_3
DUF4106
Motif
Other DBs
NCBI-ProteinID:
QUX30546
LinkDB
All DBs
Position
2002049..2004154
Genome browser
AA seq
701 aa
AA seq
DB search
MTALTAVVHDPEDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLTHCMWEIIDNSVDEAL
GGFCTRIDVTLHSDGSVSVSDDGRGIPVDAEPKSGLSGVELVMTKLHAGGKFGSGSYTAS
GGLHGVGASVVNALSSRVDVEVDRQGRTHAISFRRGIPGRFAGSGPDAEFTPVSGLEQVR
KVAQKITGTRIRFWPDMQIFLKDADIAREALLDRARQTAFLVPGLTLSVRDERVEGEPAH
EEEFRFDGGIGEFCTFLAPDEPVSDVLRIQGSGNFTETVPVLDDAGHMVPADVERRLDVD
VALRWGTGYDTTVRSFVNVIATPKGGTHINGFERALVRVINEQLRTTKLLRNSDDPVTKD
DTQEGLTAVVTVRLPEPQFEGQTKEILGTSAATRIVSQVVGKELREFLTSTKKVEKARAR
SVLEKVVGAAKARLAARQQRETQRRKTALENSALPAKLVDCRSEGLEHSELFIVEGDSAL
GTAKLARDSEFQALLPIRGKILNVQKSSVTDMLKNAECAAILQVVGAGSGRTFDIDAARY
GRIILMADADVDGAHIRCLLLTLIYRYMRPMLEAGRVYAAVPPLHRIELTNTRRKRGSKP
EDRYVYTYSDAELSRTLLDLEKRKISWKEPVQRYKGLGEMDADQLAETTMDPRHRTLRRI
RVEQAEEASSVFNLLMGNEVAPRRRFIQQGAQELDVARIDT
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgccttgaccgcagtcgtccacgaccccgaggattactccgcccgacacctgtcg
gtcctcgaaggtcttgaggcggtgcgcaaacggccgggcatgtacatcgggtccaccgac
agccgcggcctcacccactgcatgtgggagatcatcgacaactccgtggacgaggccctg
ggcggcttctgcacccggatcgacgtcacgctgcactccgacgggtcggtctcggtcagc
gacgacggacgcggcatccccgtggacgccgagcccaagtccggcctgtccggtgtggaa
ctggtcatgaccaagctccacgcgggcggcaagttcggctccggctcctacaccgcctcc
ggcggcctgcacggcgtcggcgcctcggtggtcaacgccctgtcgtcgcgcgtggacgtc
gaggtcgaccgccagggccgcacccacgcgatcagtttccgccggggcatccccggccgc
ttcgccgggtccggccccgacgccgagttcacgccggtctcgggcctggagcaggtccgc
aaggtggcccagaagatcaccggcacccgcatccggttctggccggacatgcagatcttc
ctcaaggacgccgacatcgcccgcgaggctctcctggaccgggcccgccagaccgctttc
ctggtgccggggctgaccctctccgtgcgcgacgagcgcgtggagggtgagcccgcccac
gaggaggagttccgcttcgacggcggcatcggcgagttctgcaccttcctggcccccgac
gagccggtcagcgacgtgctgcgcatccagggcagcggcaacttcaccgagaccgtcccg
gtcctggacgacgccgggcacatggtgcccgccgacgtcgagcgccgcctggacgtggac
gtcgccctgcgctggggcacgggctacgacaccaccgtgcgctccttcgtcaacgtcatc
gccacccccaagggcggcacccacatcaacggcttcgaacgggccctggtgcgggtgatc
aacgagcagctgcgcaccaccaagctgttgaggaacagcgacgaccccgtcaccaaggac
gacacccaggaggggctcaccgcggtcgtcaccgtccgcctgcccgagccccagttcgag
ggccagaccaaggagatcctcggcacctccgcggccaccaggatcgtctcccaggtggtc
ggcaaggagctgcgcgagttcctgacctccaccaagaaggtggagaaggccagggcgcgc
agcgtcctggagaaggtggtcggcgcggccaaggcccgcctggccgcgcgtcagcagcgc
gagacccagcggcgcaagaccgccctggagaactcggcgctgcccgccaagctggtggac
tgccgcagcgagggcctggagcacagcgagctgttcatcgtcgagggggactcggcgctg
ggcaccgccaagctggcccgggactcggagttccaggcgctgctgccgatccggggcaag
atcctcaacgtgcagaagtcctcggtcaccgacatgctcaagaacgccgagtgcgcggcc
atcctccaggtggtcggcgccggttcggggcgcaccttcgacatcgacgcggcccgctac
ggccgcatcatcctcatggccgacgccgacgtggacggcgcgcacatccgctgcctgctg
ctcacgctcatctaccgctacatgcggcccatgctggaggccgggcgggtgtacgcggcc
gtgccgccgctgcaccgcatcgagctgaccaacacccggcgcaagcgcggcagcaagccc
gaggaccgctacgtctacacctactccgacgccgagctctcgcgcacgctgctggacctg
gagaagcgcaagatctcctggaaggagccggtgcagcgctacaagggcctgggcgagatg
gacgccgaccagctggccgagaccaccatggacccgcgtcaccgcaccctgcgccggatc
cgggtggagcaggccgaggaggcctcctccgtcttcaacctgctgatgggcaacgaggtc
gccccgcgccgccgcttcatccagcagggcgcccaggagctggacgtggcccgcatcgac
acctga
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