Nocardiopsis akebiae: KGD83_08595
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Entry
KGD83_08595 CDS
T08903
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nake
Nocardiopsis akebiae
Pathway
nake03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nake00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGD83_08595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nake03019
]
KGD83_08595
03400 DNA repair and recombination proteins [BR:
nake03400
]
KGD83_08595
Enzymes [BR:
nake01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KGD83_08595
Messenger RNA biogenesis [BR:
nake03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KGD83_08595
DNA repair and recombination proteins [BR:
nake03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KGD83_08595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
MarR_2
Pribosyltran
Dimerisation
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QUX30552
LinkDB
All DBs
Position
2012628..2014799
Genome browser
AA seq
723 aa
AA seq
DB search
MATPTPDSTVPTAASDGALRERAEAHLRALAGDSARLREDQWTAIHALAAEHRRALVVQR
TGWGKSAVYFVATALRRAEGAGPTVIVSPLLALMRNQIAAAERAGIHARTINSSNTTDWE
NAYADVAAGRVDVLLVSPERLNNPEFRDRVLPELAAGAGLVVIDEAHCVSDWGHDFRPDY
RRIRSLLHDLPDGVPVLATTATANERVTRDVAEQLQAGGERADTLVLRGSLERESLRLAV
VRLPDPTARLSWLAEHLPKIQGSGIVYALTVSAAQETARFLAQQGMEVRAYTGQTDPDER
REAEDDLLANRVKALVATSALGMGFDKPDLGFVVHLGAPQSPISYYQQVGRAGRGVRRAE
AVLLPGREDTRIWEYFAGLSFPPEQTVRQTLDALAEAGGPLSVAHLETRVDLRRTRLEQM
LKVLDVDGAVRRVRGGWETTGQPWTYDAERYAAVSRAREREQRAMLDYLDLDTCRMEFLR
RQLDDPEAAPCGRCDVCTGEYWPADVDSTRREAAAEHLDRPGTPIAPRRQWPSGMATLGV
DLSGRIAEELRAGEGRALGRLTDIGWGNELRRVLAADAPDAPVDEHVLQGVVRVLADWNW
DRRPVGVVAMPSLTRPGMITDLAERLSRLGRLAPVGALEYRTERGTGPRRHNSAMRLEQV
YSALVAGEELTERMARLQEHTPGPVLLVDDVTDTGWSLTVGAALLRRAGAPQVLPLTLAT
AGG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggccacacccacccctgacagcaccgttcccaccgccgcgtccgacggcgcgctgcgc
gagcgcgccgaggcccacctgcgcgccctggccggggactccgcccggctgcgcgaggac
cagtggaccgccatccacgccctggccgccgagcaccgcagagccctcgtcgtccagcgc
accggatggggcaagtcggcggtgtacttcgtggccaccgcgctgcggcgagccgagggg
gcgggccccaccgtcatcgtctccccgctgctggcgctgatgcgcaaccagatcgccgcg
gccgagcgcgcgggcatccacgcgcgcaccatcaacagctccaacaccaccgactgggag
aacgcctacgccgacgtggccgcgggccgggtcgacgtcctgctggtcagccccgagcgc
ctcaacaaccccgagttccgcgaccgggtcctgcccgagctggccgcgggcgccggcctg
gtcgtcatcgacgaggcccactgcgtctccgactgggggcacgacttccgccccgactac
cggcgcatccgctccctgctgcacgacctgcccgacggcgttccggtgctggccaccacc
gccaccgccaacgaacgcgtcacacgcgacgtggccgagcagctccaagcgggcggcgag
cgcgcggacaccctggtcctgcgcggctccctggagcgcgagagcctgcgcctggccgtc
gtccggctgcccgaccccaccgcccggctcagctggctggccgagcacctgcccaagatc
cagggctcgggcatcgtctacgcgctcaccgtcagcgccgcccaggagaccgcccgcttc
ctcgcccagcagggcatggaggtgcgcgcctacaccggccagaccgaccccgacgagcgc
cgcgaggccgaggacgacctgctcgccaaccgggtcaaggcgctggtcgccaccagcgcg
ctgggcatgggcttcgacaagcccgacctgggcttcgtcgtccacctgggcgctccgcag
tccccgatctcctactaccagcaggtcggccgcgccggacgcggcgtgcggcgggccgag
gcggtcctgctgcccggccgcgaggacacccgcatctgggagtacttcgccggactgtcc
ttccctcccgagcagaccgtgcgccagaccctggacgcgctcgccgaggcgggaggaccc
ctgtccgtcgcgcacctggagacccgggtggacctgcgccgcacccgcctggagcagatg
ctcaaggtgctggacgtggacggggccgtgcgccgggtgcggggcggctgggagaccacc
ggccaaccgtggacctacgacgccgaacgctacgccgccgtcagccgggcccgcgagcgc
gagcagcgcgccatgctcgactacctcgacctggacacctgccggatggagttcctgcgc
cgccagctggacgaccccgaggccgcgccctgcggacgctgcgacgtgtgcacgggcgag
tactggcccgccgacgtggactccacccggcgcgaggccgcggccgagcacctggaccgg
cccggcacgcccatcgcgccccggcgccagtggccgagcgggatggccaccctgggcgtg
gacctgtccggaaggatcgccgaggagctgcgggcgggggagggccgagccctgggccgt
ctcaccgacatcggctggggcaacgagctgcgccgcgtcctggccgccgacgcccccgac
gcgcccgtggacgagcacgtgctccagggcgtggtgcgcgtcctggccgactggaactgg
gaccggcgccccgtcggggtggtggcgatgccctcgctcacccgccccgggatgatcacc
gacctggccgagcggctctcccggctcggacggctggcgcccgtgggggcgctggagtac
cgcaccgagcggggcaccgggccgcgcaggcacaacagcgccatgcgcctggaacaggtc
tactccgccctcgtggcgggagaggagctcaccgagcggatggcacggctacaggagcac
acccccgggccggtgctgctggtcgacgacgtcaccgacaccggctggagcctcaccgtg
ggcgccgccctgctccgcagagccggggcgccccaggtgctgcccctcaccctggccacc
gcaggggggtga
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