Nocardiopsis akebiae: KGD83_10900
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Entry
KGD83_10900 CDS
T08903
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nake
Nocardiopsis akebiae
Pathway
nake00040
Pentose and glucuronate interconversions
nake01100
Metabolic pathways
nake02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
nake00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
KGD83_10900
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KGD83_10900
Enzymes [BR:
nake01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
KGD83_10900
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
F5_F8_type_C
Trypan_PARP
PKD_5
Motif
Other DBs
NCBI-ProteinID:
QUX31710
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Position
2521095..2522573
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AA seq
492 aa
AA seq
DB search
MSSAAAQTGSATGYATQNGGTTGGAGGQTVQATTGTQIHEALCNRSSASTPIVIEVQGTI
NHGNTSKVSGDSCDTADDVIELKNISNVTIVGTGSGAVFDQLGIHVRESSNIIIQNVTVR
NVKKSGSPTSNGGDAIGMESGVRNVWVDHVTLEASGGESEGYDGLFDLKNNTQYVTLSYS
VLRNSGRGGLVGSSESDRSNGYVTYHHNRFENLDSRAPLLRGGIGHMYNNHYTQLHESGI
NSRAGARAKVENNYFEDSKDVLGTFYTDERGTWEVRGNIFDNVTWSSQGDENYPAGPDPE
STTSVGIPYSYELDDAGCVPGMLGQIAGANKGNQVSDGNCEAENPPDPDPTDPPDPDPTD
PPDPDPTDPPEGTNLSSGAGADGSGKASGTSYGNVVDGDMGTYWSPSGSTGRISVKWGSD
VTVSTVNIREAAGAEGNIGSWRVVDHDSGDVLATGSGAGVIDIDPTTLRKINFEIISSNG
TPRVAEFETYAG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggcggcagcgcagaccggtagcgccacgggttacgcgacccagaacggcggg
accaccggcggcgcgggcgggcagacggtacaggccacgaccgggacccagatccacgag
gccctgtgcaaccggtccagcgccagcaccccgatcgtcatcgaggtccaggggaccatc
aaccacggcaacacctcaaaggtgtcgggcgacagctgtgacaccgccgacgacgtgatc
gagctcaagaacatcagcaacgtcactatcgtcggcaccggcagcggagccgtgttcgac
cagttgggcatccacgtccgtgagtccagcaacatcatcatccagaacgtgaccgtccgg
aacgtcaagaagtccggctcgcccacgtccaacggcggcgacgccatcggcatggagagc
ggtgtccgcaacgtctgggtcgaccacgtcaccctggaggcgtcgggcggtgagtcggag
ggctacgacggcctcttcgacttgaagaacaacacccagtacgtcaccctctcctacagc
gtcctgcgcaactccggccgcggcggcctggtcgggtccagcgagagcgaccgctcgaac
ggctacgtcacgtaccaccacaaccggttcgagaacctggactcgcgcgcgcccctgctg
cgcggcggcataggccacatgtacaacaaccactacacgcagctgcacgagtccggcatc
aactcccgggccggtgccagagcgaaggtggagaacaactacttcgaggactccaaggac
gtcctgggcaccttctacaccgacgagaggggcacctgggaggtccgcggcaacatcttc
gacaacgtgacctggtccagccagggcgacgagaactaccccgccgggcccgaccccgag
tccaccacttcggtgggcatcccctactcctacgagctcgacgacgccgggtgcgtgccg
gggatgctgggccagatcgcgggcgcgaacaagggcaaccaggtctcggacggcaactgc
gaggcggagaacccgccggaccccgatccgaccgacccgccggacccggacccgaccgac
ccgccggaccccgaccccaccgacccgcccgaggggaccaacctcagcagcggcgccgga
gccgacggctccggcaaggccagcggcaccagctacggcaacgtcgtcgacggagacatg
ggcacctactggtcgccgagcggctcgaccggccgcatctcggtcaagtggggctccgac
gtcacggtgtccacggtcaacatccgcgaggcggccggggccgagggcaacatcggctcc
tggcgggtcgtcgaccacgacagcggtgacgtcctggccaccggaagcggagccggcgtc
atcgacatcgacccgacgacgctgcgcaagatcaacttcgagatcatcagctcgaacggc
acgccgcgcgtcgccgagttcgagacctacgccggctag
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