Nocardiopsis alba: B005_0103
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Entry
B005_0103 CDS
T02218
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family domain protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nal
Nocardiopsis alba
Pathway
nal03030
DNA replication
nal03430
Mismatch repair
nal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B005_0103
03430 Mismatch repair
B005_0103
03440 Homologous recombination
B005_0103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nal03032
]
B005_0103
03400 DNA repair and recombination proteins [BR:
nal03400
]
B005_0103
Enzymes [BR:
nal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B005_0103
DNA replication proteins [BR:
nal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
B005_0103
DNA repair and recombination proteins [BR:
nal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
B005_0103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
UVR
DUF7508
DNA_pol_A_exo1
DUF6513
Motif
Other DBs
NCBI-ProteinID:
AFR08037
UniProt:
J7LC53
LinkDB
All DBs
Position
complement(106952..108664)
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AA seq
570 aa
AA seq
DB search
MTPLGVQTSIGDLGTPLSEVTFVVVDLETTGTSASRSRITEVGAVRVRDGEILDEYTTLV
DPDTLIPAEVTLLTGITQSMVATAPRIEKVLPELLAFLTEDPDSVLVAHNAPFDTGFLKA
ACEREALEWPAPPVVDTLRLARALLPVPKVRNHRLGTLAAYYGASVTPDHRALDDARATV
DVLGGLISELVPLGATSLEELRAVSKPPTKAQRARRHLAEDLPDRPGVYVFTDSRGHSLY
VGKSNNLRRRVASYFTAAESRRRIREMAGLVEAVTPIVCATDLEASVRELRIIAERKPPF
NRRSRNPENVRWVKLTTDAYPRLAVVRSVKDDGAPYLGPYRSAREADEAREALLHALPLR
QCTHTFAPPERTVPRCVLAQLGRCGAPCDGTQGRDEYGVHAEEARTAMTADPAVVVDALT
ARIGELSAELRYEEAASLRDRLVAFLRGARRSQRLTALASVPHLVASRPGDRGWETIVVR
HGRLASCAVLTPGTDPAAFLNSLTATAERVPPGPGPVPNATAEEGELILDWLTTPGTHLI
EIEGEWTCPLRSAEAHDRMTHWAHGRASAQ
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcccttgggcgtccaaaccagcatcggtgacctcggcaccccgttgtccgaggtc
accttcgtcgtcgtcgacctggagaccaccgggaccagcgcgtcgaggtcccggatcacc
gaggtcggcgcggtgcgggtccgtgacggcgagatcctggacgagtacaccaccctggtc
gatcccgataccctcattccggccgaggtcaccctcctgaccgggatcacccagtccatg
gtggcgacggcgccccggatcgagaaggtcctgcccgagctgttggccttcctcaccgag
gatcccgacagtgtgctggtcgcccacaacgcccccttcgacaccggtttcctgaaggcc
gcctgcgaacgcgaggcgctggagtggccggcgccgccggtggtcgacaccctgcggctg
gcccgggccctcctgcccgtgcccaaggtgcgcaaccaccggctgggcaccctcgccgcc
tactacggcgcctccgtcacccccgatcaccgagccctggacgacgcccgcgccaccgtg
gacgtgctcggcgggctcatctccgaactcgtccccttgggcgccacctccctggaggag
ctgagggcggtctccaaaccaccgaccaaggcccagcgcgcccgcaggcacctcgccgag
gacctgcccgaccgtccgggcgtgtacgtgttcaccgactctcggggccacagcctgtac
gtgggcaagagcaacaacctcagacgcagggtcgcctcctacttcaccgcggccgagtcc
cgccgccggatccgcgagatggccggtctggtcgaggcggtgaccccgatcgtctgcgcc
accgacctggaggcctccgtccgtgagctgcgcatcatcgccgaacgcaaaccccccttc
aaccggcgttcgcgcaacccggagaacgtccgctgggtgaagctcaccaccgacgcctac
ccgcgtctggcggtggtccgttcggtcaaggacgacggcgccccctatctgggtccctac
cgttccgcccgcgaggcggacgaggcccgcgaggcactactgcacgccctgcccctgcga
cagtgcacccacaccttcgccccgcccgaacgtacggtgccacgctgcgtactcgcccaa
ctggggcgttgcggcgccccctgcgacgggacccaggggcgggacgagtacggggtccac
gccgaagaggcgcgcaccgccatgaccgccgaccccgctgtggtggtggacgcgctcacc
gcgaggatcggagaactgtcggccgagctgcgctacgaggaggcggcgagtctgcgcgac
cgtctcgtggccttccttcggggcgcccggcggtcccaacgtctgacggcgctcgcctcg
gtgccccacctggtcgcctcccggccgggggatcggggatgggagacgatcgtggtccgc
cacggacgtctggcctcctgcgccgtcctgaccccggggaccgacccggcggccttcctg
aactcgctcaccgccaccgccgaacgcgttccgcccggtcccggaccggtgcccaacgcc
acggcggaggagggcgagctgatcctggactggctcaccacccccggcacccacctgatc
gagatcgaaggtgagtggacatgcccgttgcggagcgccgaagcccacgatcggatgaca
cactgggcccatggccgcgcttccgctcaatga
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