Nocardiopsis alba: B005_0485
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Entry
B005_0485 CDS
T02218
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nal
Nocardiopsis alba
Pathway
nal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B005_0485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nal03019
]
B005_0485
03009 Ribosome biogenesis [BR:
nal03009
]
B005_0485
Enzymes [BR:
nal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B005_0485
Messenger RNA biogenesis [BR:
nal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B005_0485
Ribosome biogenesis [BR:
nal03009
]
Prokaryotic type
rRNA processing factors
B005_0485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Imm51
Motif
Other DBs
NCBI-ProteinID:
AFR07144
UniProt:
J7L8N8
LinkDB
All DBs
Position
complement(481559..484669)
Genome browser
AA seq
1036 aa
AA seq
DB search
MLDNEPNNGAEGAVGTTETTEKKAATPSKGDGGVRVTTPAPAKGARRAAGPPPEPDEVFT
PPAAPVTTLAGSGEVGTVKTSVRTSTSRKRTVRAAGRPEEISEAAAGGRASREKGRVDSR
AAEPDEGSRKTRVEATEEKENSGRSRSRSRTRTRATKSVETPAPEPVEAEEDETTPTAEA
AGALFTPPGGMLFQPPVAQESAPTRPRKEVEPEPEQVEEPEETERASAAEETGAEERPGR
RRRRRGGRGRGRSRGAEESAEDEERGDASGETDTAKGRDKDDRSASETDTADDEGSEDSE
DTSEDGSERGSSRRRRRRRRRSGSGGETAVDDPPNTVVKVREPRQERPIEDEVQAVRGST
RLEAKKQRRREGREQGRRRAPIVTESEFLARREAVKRDLVVRRTGDRTQIAVLEDDVLVE
HYVDRATHRSYVGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDSFGLEGQPKR
IESVLKSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDKERAR
LKQILKKVMPSGAGVIVRTAAEGASEEELERDITRLAKQWDSIKRKSKSAGAPSLLNSEP
DLTVRVVRDVFNEDFSSLVVSGGEAWTTVHEYVDYVAPNLSERLSHWTEDRDVFAAYRID
EQINKALERKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGQGGNLEETVTKNNLEAAEEIV
RQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRTKHQVAEVTSLGLVQMTRKR
VGQGLLEAFSHTCDHCNGRGLLLSTEPVENKGGGNGGRKKKKGKGEADQASDKAEKTDRT
EKVEEPVEDTAVAVETDEAPAADEGRSEKADKPAKRTRSRKASEKADKSDKDAERVEETA
ETSAPEGTDDTEVAAEAPAKKTRKRASRAKKTEATSHEPTEAVTEPTEEKEAAEAPSEEE
APVKRTRRRTTTRKTAKVDAGEGERATVEDDSDASTTRTTADGDAESATERPKRRRTRRT
RTAVSSPSGETTVDAG
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagcccaacaacggtgccgaaggcgccgtgggtacaactgaaacaacc
gagaagaaggcggcgacgccctccaagggggacggcggggtccgggtcaccacacccgcg
cccgccaagggcgctcgccgcgcggcgggaccgcccccggaaccggacgaggtcttcacc
ccgccggccgccccggtgaccaccctcgccggctccggtgaggtgggtacggtcaagacc
tcggtccggacctccacctcgcgtaagcgcaccgtgcgcgccgcgggtcgccccgaggag
atctccgaggcggcggcgggaggccgcgcgtcccgggagaagggacgcgtcgactcgcgc
gccgccgagcccgacgaagggtcgcgcaagacccgggtcgaggcgaccgaggagaaggag
aacagcggccggagccgctctcgttccaggacgcgcacccgtgcgaccaagagcgtggag
acccccgcgcccgagccggtcgaggccgaggaggacgagaccacccccaccgccgaggcg
gcgggcgcgctcttcactcctcccggaggcatgctcttccagccccccgtggcgcaggag
agcgctccgacccgaccccgcaaggaggtcgagcccgaacccgagcaggtggaggagccc
gaggagaccgagcgggcctccgccgccgaggagaccggcgccgaggagcgtcccgggcgt
cgtcggcgccgtcggggcggtcgtggacgcggccgttcgcgcggcgccgaggagagcgcc
gaggacgaggagcgcggcgacgcctccggcgagaccgacacggccaaaggccgtgacaag
gacgaccggtccgcctccgagaccgacacggccgacgacgagggttccgaggactccgag
gacacctccgaggacggttcggagcgtggtagcagccgtcgccgccgtcgtcggcggcgc
cgttccggctccggtggcgagaccgccgtggacgacccgcccaacaccgtggtcaaggtg
cgcgagccgcgccaggagcgtcccatcgaggacgaggtccaggcggtccgcggctccacc
cgtctggaggccaagaagcagcgccgccgcgaggggcgtgagcagggacgccgtcgcgcc
ccgatcgtgaccgagtcggagttcctggcccgccgcgaggcggtcaagcgcgacctggtg
gtccgtcggaccggcgaccgtacccagatcgcggtcctggaggacgacgtcctcgtcgag
cactacgtcgaccgggccacccaccgttcctacgtgggcaacgtgtacctgggtcgcgtg
cagaacgtgctgccgtcgatggaggccgccttcgtcgacatcggcaagggccgtaacgcc
gtgctgtacgccggcgaggtcaactgggactccttcggtctggagggccagcccaagcgc
atcgagtcggtgctcaagtccggtcagtccgtcctggtgcaggtcaccaaggacccgatc
ggccacaagggcgcccgtctgaccagccagatcagcctgcccggccgctacctggtgtac
gtgcccggcggttcgatgaccgggatcagccgtaagctccccgacaaggagcgcgcccgc
ctcaagcagatcctcaagaaggtgatgccctccggcgccggcgtgatcgtgcggaccgcg
gccgagggcgccagcgaggaggagctggagcgcgacatcacgcgtctggccaagcagtgg
gactccatcaagcgcaagtccaagtcggccggcgccccgtccctgctcaacagcgagccc
gacctgaccgtccgtgtcgtccgcgacgtcttcaacgaggacttctccagcctggtcgtc
tccggtggcgaggcctggaccaccgtccacgagtacgtcgactacgtggcgcccaacctc
tccgagcggctgtcgcactggaccgaggaccgtgacgtcttcgcggcctaccggatcgac
gagcagatcaacaaggcgctcgagcgcaaggtgtggctgcccagcggtggttcgctgatc
atcgaccgcaccgaggccatgaccgtggtcgacgtcaacaccggtaagttcaccggccag
ggcggcaacctggaggagacggtcaccaagaacaacctggaggcggccgaggagatcgtc
cgtcagctccggttgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtg
ctggagtccaaccgcgacctggtgctgcgccggatgttggagtgcctgtcccgggaccgg
accaagcaccaggtggccgaggtcacctcgctgggcctggtccagatgacccgtaagcgg
gtcggacaggggctgctggaggccttctcgcacacctgtgaccactgcaatggtcgcggc
ctgttgctctccaccgaaccggtggagaacaagggcggcggcaacggcggtcgcaagaag
aagaagggcaagggcgaggccgaccaggcctccgacaaggccgagaagacggacaggacc
gagaaggtcgaggagcccgtcgaggacacggccgtcgccgtggagaccgacgaggcgccc
gccgcggacgagggacgctcggagaaggccgacaagcccgccaagcgcacccggagccgt
aaggcctccgagaaggccgacaagtccgacaaggacgccgagcgggtcgaggagaccgcg
gagacgtccgctcccgagggaacggacgacaccgaggtcgcggcggaggcccccgccaag
aagacccgtaagcgcgcctccagggcgaagaagaccgaggcgacctctcatgagcccacc
gaggccgtgacggagcccaccgaggagaaggaggccgccgaggccccctccgaggaggag
gccccggtcaagaggacccgccggcgcaccaccacccgcaagaccgccaaggtcgacgcc
ggtgagggtgagcgggcgacggtggaggacgactcggacgcctccaccacacggacgacc
gccgacggtgacgccgagagcgccaccgaacggcccaagcgccgccgtacgcggcggacc
aggaccgcggtgtcctcgccctcgggcgagaccacggtcgacgcgggctga
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