Nocardiopsis alba: B005_0717
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Entry
B005_0717 CDS
T02218
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nal
Nocardiopsis alba
Pathway
nal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B005_0717 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nal03019
]
B005_0717 (pnp)
03016 Transfer RNA biogenesis [BR:
nal03016
]
B005_0717 (pnp)
Enzymes [BR:
nal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
B005_0717 (pnp)
Messenger RNA biogenesis [BR:
nal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B005_0717 (pnp)
Transfer RNA biogenesis [BR:
nal03016
]
Prokaryotic type
tRNA degradation factors
B005_0717 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
AFR08592
UniProt:
J7LDL9
LinkDB
All DBs
Position
complement(732084..734390)
Genome browser
AA seq
768 aa
AA seq
DB search
MEGVFSAEAVIDNGGFGTRTIRFETGRLARQAAGSATVYLDDETVVLSATTASKRPKDNL
DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIV
ETVLALHPEHLYDVVAINAASMSTQIAGLPFSGPIGGVRVALIDGQWVGFPTHAELENAT
FDMVVAGRVLEDGDVAIMMVEAESTTRTLKLVAEGAVGPNEQTVAEGLEAAKPFIKVLCK
AQQAVAEQAGREEGEFPIFLDYEDDAYAAVEGAVREDLAKALTIADKQDREAELDKIKAE
AGERLAADFEGREKEVGAAFRSLSKQLMRERVLRDQVRIDGRGPKDIRQLSAEVGILPRV
HGSALFERGETQIMGVTTLNMLRMEQTVDTLNPEKTKRYMHNYNFPPYSTGETGRVGSPK
RREIGHGALAERALLPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLMAAGVPL
KEMVSGIAMGLISEGDEFVTLTDILGAEDAFGDMDFKVAGTRDLITALQLDTKLDGIPAE
QLALALQQARGARLAILDVMQEAIERPAEMSPNAPRILTVKVPVEKIGEVIGPKGKMINS
IQDDTGADITIEDDGTIYIGATDGPSAEAARDTINQIANPTMPEVGDRYLGTVVKTTTFG
AFVSLLPGKDGLLHISQIRKLHGGQRIENLDDVISIGEKIQVEIREIDDRGKLSLVPVEV
VEAEAAKNEGGESSESAAKGEDKGDDAKGEGAPRRRRRRSSGGRSENT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgttttctctgccgaagccgtcatcgacaacggtgggttcggcacccgcacc
atccgcttcgagaccggccgtctggcccgtcaggccgccggttcggccacggtctacctg
gacgacgagaccgtcgtcctgtcggccaccaccgcctcgaagcgtcccaaggacaacctc
gacttcttcccgctgacggtggacgtcgaggagcggatgtacgccgccggccgtatcccc
ggctcgttcttccgtcgtgagggccgtccttccgaggacgccatcctcacctgccgtctc
atcgaccggccgctgcgtccgtccttcaagaagggcctgcgcaacgagatccagatcgtc
gagacggtcctggccctgcaccccgagcacctgtacgacgtcgtcgccatcaacgcggcc
tcgatgtccacccagatcgccgggctgcccttctccggtccgatcggcggcgtgcgcgtc
gctctgatcgacggccagtgggtcggcttccccacccacgccgagctggagaacgccacc
ttcgacatggtcgtggccggccgcgtcctggaggacggcgacgtcgcgatcatgatggtc
gaggccgagtccaccacgcgcacgctgaagctggtcgccgagggcgccgtcggccccaac
gagcagaccgtggccgagggcctggaggccgccaagcccttcatcaaggtgctctgcaag
gcccagcaggccgtcgccgagcaggccggtcgtgaagagggcgagttcccgatcttcctc
gactacgaggacgacgcctacgccgccgtcgagggcgcggtccgcgaggacctggccaag
gcgctcaccatcgcggacaagcaggaccgcgaggccgagctcgacaagatcaaggccgag
gccggcgagcgtctggccgcggacttcgagggtcgcgagaaggaggtcggcgccgccttc
cgcagcctgagcaagcagctcatgcgcgagcgcgtgctgcgcgaccaggtccgcatcgac
ggccgtggtcccaaggacatccgccagctcagtgccgaggtgggcatcctgccccgcgtg
cacggctcggctctcttcgagcgcggtgagacccagatcatgggcgtcaccacgctgaac
atgctgcgcatggagcagacggtcgacactctcaaccctgagaagaccaagcgctacatg
cacaactacaacttcccgccctactccaccggtgagaccggtcgggtgggctcgcccaag
cggcgcgagatcgggcacggcgccctggccgagcgggccctgctgccggtgctgccctcc
cgcgaggagttcccgtacgcgatccgtcaggtctccgaggccctcggctccaacggctcc
acctcgatgggttcggtctgcgcctccaccatgtccctgatggcggccggtgtgcccctc
aaggagatggtctccggtatcgccatgggtctgatcagcgagggcgacgagttcgtcacg
ctgaccgacatcctcggtgccgaggacgccttcggcgacatggacttcaaggtcgccggt
acccgtgacctgatcacggcccttcagctcgacaccaagctcgacggtatccccgccgag
cagctggccctggcgctccagcaggcccgcggcgcccgtctggccatcctggacgtcatg
caggaggccatcgagcgtccggccgagatgagcccgaacgctccgcgcatcctgaccgtc
aaggtcccggtggagaagatcggcgaggtcatcggccccaagggcaagatgatcaactcg
atccaggacgacaccggcgcggacatcacgatcgaggacgacggcaccatctacatcggt
gccaccgacggcccctccgccgaggcggcccgggacacgatcaaccagatcgccaacccg
accatgcccgaggtcggcgaccgctacctgggtaccgtcgtcaagacgaccaccttcggc
gcgttcgtctcgctgctgcccggcaaggacggtctgctgcacatctcgcagatccgtaag
ctgcacggcggtcagcggatcgagaacctcgacgacgtgatcagcatcggcgagaagatc
caggtcgagatccgcgagatcgacgaccggggcaagctctccctggtcccggtcgaggtc
gtcgaggccgaggccgccaagaacgagggcggggagtcctccgagtccgccgccaagggc
gaggacaagggcgacgacgccaagggcgagggcgccccgcgtcgccgtcgtcgtcgcagc
tcgggcgggcgttccgagaacacctga
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integrated database retrieval system
