Nocardiopsis alba: B005_2254
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Entry
B005_2254 CDS
T02218
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family protein
Organism
nal
Nocardiopsis alba
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
zf-HC2
Sigma70_r4_2
PhyR_sigma-like
DUF11
Sigma70_ECF
DUF3344
Motif
Other DBs
NCBI-ProteinID:
AFR09185
UniProt:
J7LCQ3
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Position
2359976..2362882
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AA seq
968 aa
AA seq
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MTDADGEYTETLLGDAEIIRQVKAGDNAAFGTLYERHAGAARGLARQLLRGEAEVEDAVA
EAFTKVLSVIQRGGGPTDAFRPYLLTAVRNAAYDRGRGEKRQVVTDDMESFDAGEPFVDP
ALEGLERSLIARAFLSLPERWQSVLWHTEIEGVKPAEAATILGMNPNGVAALAYRAREGL
RQAYLQMHLAGSGTAEACRPTIGLLGAYVRGGLSKRDTTKVDRHMDDCGECREVYAELMD
VNVGLRGVMLPLVVGFGATGYLASVPGATAGGAWWNRMSRRGQQATAGAAAAAGMAVAVA
FALVGGDTPIPEEPSPAAAPPIDAPAEDPPPPAQDTPDDPPPATPDEPAPVPAPPADVPP
EEVPDPPAPQEPDAPAPDAPAPEDPREDPPPAPEEPEPEPAPEEPLPEFAVGIDPVGSLV
PGSEGIMVLDVLNTGQDTAEDVLAQITLPPGVEMISSGGAGNAVPMASGNGDWGCSAGSG
GGECVRSGMAAGESSTHFLDVRVAPDADVDVPAGVVISSGNVSHRATGERGVTSEGIPAR
YATAGQVRTEAVGNSLMTCTDPEESKKPTWPWPWWGTPGIPETPEALPGPTPPAPTEDPG
PTLPLPEQEDADLGRAPADHVSPEDAGEALDDLLGGGEEGTPDGPPGYPTPEAPSPEDED
PAPTGPPLTPEPPELPGETVEPTDPGEDHRDEDEPEEHEEGDCAQARARSGEGIDNDNWV
MAPLDRDQDPTTTSSSSATWSLPEGGSVRWAGLYFSASGDPGVPTARVKGPGMAAYTTVT
ATETRSADLPAYSAYQSFADVTDLVRASGGGQWWVADVPAQGGRGVYAGWSLVLVLEDPA
VEGYQQAMVLDETSAVFQDSNGAVFPVSGLLPTAVRTGVDVVAWEGDAELGGDRVLIDGV
PHAPSEGPGTVDNAFVGSARGADGDPMTFGTDVTRFDAVLGRESEIRILSEQDALLVGVI
ALAAPMRT
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgccgatggggagtacacagagacgcttctcggggacgccgagatcatccga
caggtcaaagccggtgacaacgcggccttcggaaccctctacgagcgtcacgccggagcg
gcccgagggctggccagacagctcctgagaggcgaggccgaggtcgaggacgccgtcgcc
gaggcgttcaccaaggtgctcagcgtcatacagcgagggggagggcccaccgacgccttc
cgcccctacctgctcacggcggtgcgcaacgccgcctacgaccgggggagaggcgagaaa
cgccaggtcgtcacggacgacatggagagcttcgacgccggagagcccttcgtcgacccg
gcactggaggggctggaacgttcgctgatcgcgcgcgccttcctctccctgcccgaacgt
tggcagtcggtcctgtggcacaccgagatcgaaggggtcaaacccgccgaggcggcgacc
atcctcggcatgaaccccaacggggtggcggccctggcctaccgcgcccgcgaggggctg
cgccaggcctacctccagatgcacctggcgggcagtgggaccgcggaggcctgccgtccc
accatcggccttctgggcgcctacgtacgcggaggtctgtccaaacgcgacaccaccaag
gtcgaccggcacatggacgactgcggcgagtgccgtgaggtgtacgcggagctgatggac
gtcaacgtcggactgcgcggggtcatgctgcccctggtggtcggcttcggcgccacgggc
tacctggcctccgtccccggcgcgacggccggcggcgcctggtggaatcggatgtcccga
agagggcagcaggccacggccggagccgcggcggccgccggcatggcggtcgccgtcgcc
ttcgccctggtcggtggggacacaccgatccccgaggagccgtccccggccgcggcaccg
ccgatcgacgcccccgccgaggacccgccgcccccggcccaggacacccccgacgacccg
ccgcccgccacgccggacgagcccgctccggtaccggccccgcccgccgacgttcccccg
gaggaggtcccggacccgcccgcgccccaggaaccggacgccccggcaccggacgccccg
gcaccggaggacccccgggaggacccgccgcccgcccccgaggagcccgaacccgaaccg
gcccccgaggaaccgctgcccgagttcgccgtgggcatcgacccggtcgggtcgctcgtg
ccgggcagtgaggggatcatggtcctcgacgtgctcaacaccgggcaggacacggccgag
gacgtcctcgcccagatcaccctccctcccggagtggagatgatctcctccggcggagcc
ggcaacgcggtcccgatggcctccggtaacggtgactggggctgttcggccgggagcggc
ggcggtgaatgcgtgcgttcgggcatggccgcgggagagagcagcacccacttcctcgac
gttcgggtggcccccgacgccgacgtggacgtgcccgccggggtcgtgatctcctctggg
aacgtgagccatcgggccaccggcgaacgcggggtcacctccgaggggatccccgcccgg
tacgccacggcggggcaggtgcgcacggaggccgtcggcaactccctcatgacctgtacc
gaccccgaggagtcgaagaagcccacctggccgtggccctggtggggcacccccgggatc
ccggagacccccgaggcccttcccgggccgacccctcccgccccgacggaggaccccggg
cccaccctcccgctccccgaacaggaggacgccgacctcgggcgggcccccgccgaccac
gtctctcccgaggacgcgggcgaggccctcgacgacctgctcggcggaggcgaggaaggc
acacccgacggaccgcccggatacccgaccccggaggcgccgtcccccgaggacgaggac
cccgctccgaccggacctcccctgacacccgaaccccccgagcttcccggggagaccgtc
gaacccaccgacccgggcgaagaccaccgggacgaggacgaaccggaggagcacgaggag
ggcgactgcgcccaggcccgcgcccgctccggggagggcatcgacaacgacaactgggtg
atggccccgctcgaccgcgaccaggaccccacgaccacctcctccagttccgccacctgg
tcccttcccgagggcggttcggtccgctgggccgggctgtacttctccgcctccggggac
ccgggcgtgccgaccgcgcgggtgaaggggccgggcatggccgcctacaccaccgtcacc
gccaccgagacccgctccgccgacctgcccgcctactcggcctaccagtcgttcgccgac
gtcaccgacctggtgcgcgcctccggcggcgggcagtggtgggtcgccgacgtccccgcc
caaggggggcgcggcgtctacgcgggctggagcctggtcctggtcctggaggaccccgcc
gtggaggggtaccagcaggcgatggtcctggacgagacctcggcggtcttccaggactcg
aacggagcggtcttcccggtctcagggctgctcccgacggcggtccggaccggggtcgac
gtggtcgcctgggaaggggacgccgaattgggcggcgaccgtgtcctgatcgacggtgtc
ccccacgccccttccgaagggccgggaaccgtcgacaacgccttcgtgggttccgcgcgt
ggagcggacggggatccgatgaccttcggtaccgacgtgacgcgattcgacgcggtgctc
ggcagggaatcggaaatccgaatcctctccgaacaggacgcgctactggtgggggtcatc
gcactcgcggcccctatgcgcacctga
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