Nocardiopsis alba: B005_3544
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Entry
B005_3544 CDS
T02218
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nal
Nocardiopsis alba
Pathway
nal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B005_3544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nal03019
]
B005_3544
Messenger RNA biogenesis [BR:
nal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B005_3544
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
AFR07869
UniProt:
J7LAN5
LinkDB
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Position
3716738..3718423
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPQGEGVLRVVPLGGLGEIGRNMTVFEYAGKLLIVDCGVLFPEEEQPGV
DLILPDFDYIRDRLDDVEAIVLTHGHEDHIGGVPFLLRERADIPIVGSKLTLALISAKLG
EHRIKPVTVQVEEGEKQDFGPFGLEFFAVNHSIPDALAVGIRTPGGTVLHTGDFKMDQLP
LDGRLTDLAGFARFGDEGVDLLLSDSTNAEQPGFVVGERNLNEAIDKVFRQAEKRIVVAC
FASHVHRVQQVIDAATAHGRKIAFVGRSMVRNMNIARDLGYLSIPGDTIVDVKQLDKMPG
DEVVLVCTGSQGEPMAALSRMANRDHQIRIEEGDTILLASSLIPGNENSVNRVINGLTRW
GAKVVHKGNALVHVSGHASAGELLYVLNMVRPRNFMPVHGEWRHMRAHADLAKLTGVPAD
RVVIAEDGVVVDLYKNRARIVGAVQAGYVYVDGSSVGDVTEAALKDRRILGDEGFISVVV
AVDSNSGKILGEPEIHTRGAGIGADAYDDVIDKLQDALDRAAADGVNDPHQLRQLIRRST
GRWVNETYRRRPMIIPVLVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacccgcaccccgagctcggcccgcccccgccccagggcgagggcgtcctgagg
gtcgtcccgctgggcggtctcggtgagatcggccggaacatgacggtcttcgagtacgcc
ggcaagctgctcatcgtcgactgtggcgtgctcttccccgaggaggagcagcccggcgtc
gacctgatcctgccggacttcgactacatccgggaccgcctggacgacgtcgaggcgatc
gtgctcacccacgggcacgaggaccacatcggcggtgtgccgttcctgctgcgtgagcgc
gccgacatcccgatcgtcggttccaagctcaccctggcgctgatcagcgccaagctgggc
gagcaccgcatcaagccggtgaccgtccaggtcgaggagggggagaagcaggacttcggc
cccttcggcctggagttcttcgcggtcaaccactccatcccggacgcgctggcggtcggt
atccgcacccccggcggtacggtgctgcacaccggcgacttcaagatggaccagcttccg
ctggacggccgcctcaccgacctggccggcttcgcccggttcggcgacgagggcgtcgac
ctgctgctgtcggactccaccaacgccgagcagcccggtttcgtcgtcggcgagcggaac
ctgaacgaggccatcgacaaggtgttccgtcaggccgagaagcgcatcgtcgtggcctgt
ttcgcctcgcacgtgcaccgtgtccagcaggtcatcgacgcggccaccgcgcacgggcgc
aagatcgccttcgtgggccgctccatggtccgcaacatgaacatcgcgcgcgacctgggc
tacctcagcattccgggcgacacgatcgtcgacgtcaagcagctcgacaagatgcccggc
gacgaggtcgtcctggtctgcaccggttcgcagggcgagcccatggccgccctcagccgg
atggccaaccgggaccaccagatccggatcgaggagggggacaccatcctgctggcctcc
tcgctcatccccggcaacgagaactcggtcaaccgggtgatcaacggtctgacccgctgg
ggcgccaaggtcgtgcacaagggcaacgccctggtgcacgtgtccggacacgcctccgcc
ggcgagctgctgtacgtgctcaacatggtgcgtccgcgcaacttcatgccggtgcacggc
gagtggcgccacatgcgggcccacgccgacctggccaagctcaccggtgtcccggccgac
agggtcgtcatcgccgaggacggcgtggtcgtcgacctgtacaagaaccgggccaggatc
gtcggcgcggtccaggccggttacgtgtacgtcgacggctcctcggtcggcgacgtcacc
gaggccgcgctcaaggaccgtcgcatcctcggtgacgagggcttcatctccgtggtcgtg
gccgtggactccaacagcggcaagatcctgggcgagcccgagatccacacgcggggcgcg
ggcatcggcgccgacgcctacgacgacgtcatcgacaagctccaggacgccctggaccgg
gccgccgccgacggggtcaacgacccgcaccagctccggcagctgatccgtcgcagcacg
gggcgttgggtgaacgagacgtaccgtcgtcgcccgatgatcatccccgtcctcgtcgag
gtctga
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